PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

fgenesh1_pm.chr_7_#_224

Organism

Ostreococcus sp. RCC809

Taxonomic ID

385169

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus

Family

MYB_related

Protein Properties

Length: 631aa MW: 72141 Da PI: 6.2913

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
fgenesh1_pm.chr_7_#_224	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.1	2.2e-09	278	326	2	47
SSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 g+WT+eE++++ d + l+ g W t ++ + gR ++qc ++++++ fgenesh1_pm.chr_7_#_224 278 GKWTPEEHQRFMDILASLPDGkanyEWGTFSKSIK-GRVGYQCSNYYRTL 326 89******************************9.*********987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.084	272	331	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.4E-7	274	330	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.87E-7	277	333	IPR009057	Homeodomain-like
Pfam	PF00249	8.5E-7	278	326	IPR001005	SANT/Myb domain
SuperFamily	SSF57850	2.12E-7	428	498	No hit	No description
Gene3D	G3DSA:3.30.40.10	2.2E-5	443	498	IPR013083	Zinc finger, RING/FYVE/PHD-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 631 aa Download sequence Send to blast
MSENDMAIAN AAVVGGDEVK VAASPRAVEA GDNAETKTAV DKPAWMMEED EDDGLTEEQR 60 RLIAERVAAL QNRFKKFEEK TTKEKIDELM LGNSDKNLTE REAEMVLRVC NGNEFEASDR 120 LSEAQDGESF LMSVRFMIQE EDALKRRAHS SKAGQAATEK FNKRLERMRK RRSSFGFDEE 180 SDGEAEGAPE EFFETEYILE ESLGVQFVRH TKKNVNVKRL RLDDAIARAQ EAEELAGPEV 240 DPYEGWSEAR IKAWKNREKN ENQYYYRFNE PGEKQANGKW TPEEHQRFMD ILASLPDGKA 300 NYEWGTFSKS IKGRVGYQCS NYYRTLVKNQ VILDENYMLD PVSGELRFNF KNKGFTRAEP 360 VPGEPRMVMV KKVIKPRKPK AAPKPKASKP KKKKLSEGDK AFHCNVKLGD IRRSGRAAKK 420 TYTDGSDVED DDEFEELPVL PGFVDPITRM PIEEPAISPF GHVAGYETWC RILRQPEAPD 480 TCPFTKQPLK RRELVKLTHE NIEEHRHKIC NYRHHTTFPR FDRPSRCMSN AKASSDGSST 540 NAVRDLGSGR HRIRTPTHPT EGDYLSLKVE ELIFGALFAF MAYKLWQSVR GLFRYWKYVR 600 APNAPEVELG LEDEGFSEGE ESDAERTKRD *

Sequence ? help Back to Top

Protein Sequence Length: 631 aa Download sequence Send to blast

MSENDMAIAN AAVVGGDEVK VAASPRAVEA GDNAETKTAV DKPAWMMEED EDDGLTEEQR  60
RLIAERVAAL QNRFKKFEEK TTKEKIDELM LGNSDKNLTE REAEMVLRVC NGNEFEASDR  120
LSEAQDGESF LMSVRFMIQE EDALKRRAHS SKAGQAATEK FNKRLERMRK RRSSFGFDEE  180
SDGEAEGAPE EFFETEYILE ESLGVQFVRH TKKNVNVKRL RLDDAIARAQ EAEELAGPEV  240
DPYEGWSEAR IKAWKNREKN ENQYYYRFNE PGEKQANGKW TPEEHQRFMD ILASLPDGKA  300
NYEWGTFSKS IKGRVGYQCS NYYRTLVKNQ VILDENYMLD PVSGELRFNF KNKGFTRAEP  360
VPGEPRMVMV KKVIKPRKPK AAPKPKASKP KKKKLSEGDK AFHCNVKLGD IRRSGRAAKK  420
TYTDGSDVED DDEFEELPVL PGFVDPITRM PIEEPAISPF GHVAGYETWC RILRQPEAPD  480
TCPFTKQPLK RRELVKLTHE NIEEHRHKIC NYRHHTTFPR FDRPSRCMSN AKASSDGSST  540
NAVRDLGSGR HRIRTPTHPT EGDYLSLKVE ELIFGALFAF MAYKLWQSVR GLFRYWKYVR  600
APNAPEVELG LEDEGFSEGE ESDAERTKRD *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	167	172	MRKRRS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_001418705.1	0.0	predicted protein
TrEMBL	A4S095	0.0	A4S095_OSTLU; Uncharacterized protein
STRING	ABO96998	0.0	(Ostreococcus 'lucimarinus')

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP7034	3	3