PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID fgenesh1_pm.chr_3_#_182
Organism
Ostreococcus sp. RCC809
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family MYB_related
Protein Properties Length: 493aa    MW: 52560.6 Da    PI: 9.379
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
fgenesh1_pm.chr_3_#_182genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.63.9e-10398447248
                              SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT....TTS-HHHHHHHHHHHT CS
          Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg....kgRtlkqcksrwqkyl 48 
                              ++W  eE e lv++v+q Ggg W+ I + +g    ++Rt+ ++k++w+++l
  fgenesh1_pm.chr_3_#_182 398 NPWALEEAEALVRGVAQCGGGKWADIKK-LGfpaiEHRTAVDLKDKWRNLL 447
                              68***********************966.5557****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.975392451IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.3E-13394448IPR009057Homeodomain-like
SuperFamilySSF466892.24E-15394456IPR009057Homeodomain-like
SMARTSM007172.7E-6396449IPR001005SANT/Myb domain
PfamPF002498.8E-7398447IPR001005SANT/Myb domain
CDDcd116602.86E-20399448No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MATTATTAKA PAAAAKGTAT TPVRRDGAPG AMRSYRFDSA HNAGVDGEAS HMADPVDARA  60
FYADPVLKAA EREILSSTKE QRRIAAECSA LLEQGREYDA MLGGGISTIL ASGGSDDDDK  120
ASTQSVAYLH SGIDPSGRSY SPFDAALDES AEHLLCDFGA PIVDGSIGLI DDDGAEIVVE  180
RTPPSLSSWM SNGNLCDLDV PNGHEPEWAS GGGARGAYSH IPAVVEFGVP GQIEMESIAS  240
LRSQYKAVFG KETNSNNRQW IVKRLEAFRN GDEFTPSSSR FSSPLSGEDT MLTIGNSRFK  300
PQGSPKRAAG RRHVKSSRSP YDDDVEEPES PRRGTSAKSR AKNAKGKRTA DTALPKSANK  360
KAKGEDDDAG KKGARAAKAT GRGKPGENGT GRRSKHHNPW ALEEAEALVR GVAQCGGGKW  420
ADIKKLGFPA IEHRTAVDLK DKWRNLLRIA MLPQQSVKTV SDKKREIPQE LLAKVRELAA  480
KQAKAKAAES RR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001416857.10.0predicted protein
TrEMBLA4RTW70.0A4RTW7_OSTLU; Uncharacterized protein
STRINGABO951500.0(Ostreococcus 'lucimarinus')
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1276916
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.26e-19TRF-like 6