PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID fgenesh1_pm.chr_1_#_247
Organism
Ostreococcus sp. RCC809
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family C3H
Protein Properties Length: 1027aa    MW: 95580.6 Da    PI: 9.293
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
fgenesh1_pm.chr_1_#_247genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.12.3e-067692522
                             --SGGGGTS--TTTTT-S CS
                  zf-CCCH  5 lCrffartGtCkyGdrCk 22
                              C+f+ r G Ck+G+rC+
  fgenesh1_pm.chr_1_#_247 76 ACKFWNR-GSCKFGARCN 92
                             5******.*********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF136341.61382IPR025574Nucleoporin FG repeat
PROSITE profilePS5010312.6247698IPR000571Zinc finger, CCCH-type
PfamPF136346.3E-11470554IPR025574Nucleoporin FG repeat
PfamPF136341.8E-6550628IPR025574Nucleoporin FG repeat
PfamPF136345.8E-9591668IPR025574Nucleoporin FG repeat
PfamPF136342.5E-7625698IPR025574Nucleoporin FG repeat
PfamPF136340.014665750IPR025574Nucleoporin FG repeat
Gene3DG3DSA:3.30.1610.105.6E-358851024IPR007230Peptidase S59, nucleoporin
SuperFamilySSF822152.09E-318851024IPR007230Peptidase S59, nucleoporin
PROSITE profilePS5143440.6838891026IPR007230Peptidase S59, nucleoporin
PfamPF040968.0E-298911023IPR007230Peptidase S59, nucleoporin
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006406Biological ProcessmRNA export from nucleus
GO:1902446Biological Processregulation of shade avoidance
GO:0005643Cellular Componentnuclear pore
GO:0005737Cellular Componentcytoplasm
GO:0031965Cellular Componentnuclear membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1027 aa     Download sequence    Send to blast
MAFGGFGGGV PSPFGGVQQQ PQSPFGGGGA SAFGTPNAFG APTGASNGGN AFGGGTPGAS  60
GAFGAAQTAP GAVANACKFW NRGSCKFGAR CNNKHVCSKC GSTAHRAVNC SVGGGSGYRA  120
TRVMDKELLS PGTSYAMVHS ISAMPENLSK SVEEIRATAY ASADQPAAAG AAGGFGATPA  180
ASPFGGASTS TGGAFGGGGG GFGASAPSAS PFGGGGGGGA FGAPSSGGAF GAPSTTGAFG  240
APSTGGAFGG SPAGGGFGAS AASPSPFGGA STTSGFGASP SSAPSGGLFG GGGAAGGFGA  300
SATPSAFGAP STTGGFGQSS ATPGGFGSSA PAASPFGAST ATPGAFGASA PTGAFGAAPT  360
PGAFGAAPTP SAFGAAPTPG AFGAAPAASP FGAASAPAAA STPFGAAPST PSAFGATPTA  420
GGGLFGASTP APSGGLFGAS TPAAGGGFFG ASAPATPATG GGLFGASAAS GFGAPKPAGG  480
LFGAAPSTPA TGGGLFGAST AASTPAAGGG LFGASAPATG GGLFGAAAPA PTPGGGLFGA  540
ASSAAATPAF GGFGASSAVP TLGSAPAASG GAFGAAATPA STPGGGLFGA SAPAAGGGLF  600
GASAPAAGAS PGGGLFGAAK PAGGGLFGAA PSTGGGLFGA APSTGAAPGG GLFGASAPSS  660
APSGGLFGAA PATGGGLFGA SAPAAGGSIF GGGLGAAQPS AGALVPYGAQ PAAATTPYGS  720
PLQPPQLALA TTEPAPAKQS LLGKMQSPAA GAAATAFPVR SLTPRSPWLT SRGGISREPK  780
PRGAVSVLSP GGAAQSVGTP VSGPRPGSAV SVATPSSGGW LFKPRENPRA LFIRPEGAAA  840
SPTPSVALAV SPTREEQSPE RRQVHFADDK ENMAGKSPSR NVVIPKLTAE GYSMSPSIEQ  900
LERMFERNGD EALAAVDNFS ISSEAYGRVK WLEPVDIRGL DLDKIVSFEQ ACLCLYPEDQ  960
GIEPPEDGQG LKKRAEVTLY GILPKKSGDA AKEKYREKII KQTEKANAEL VEYNPDTGIW  1020
RFILQL*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001415560.10.0predicted protein
TrEMBLA4RRF20.0A4RRF2_OSTLU; Uncharacterized protein
STRINGABO938520.0(Ostreococcus 'lucimarinus')