PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | fgenesh1_pm.chr_17_#_137 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
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Family | HB-other | ||||||||
Protein Properties | Length: 209aa MW: 24008.9 Da PI: 11.8985 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 36.9 | 6e-12 | 16 | 65 | 8 | 57 |
-HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++ +L +Fe +r p+a++r++LAk++g te+ V WF rR k+k+ fgenesh1_pm.chr_17_#_137 16 DEDGAAILRGVFELERRPDAATRRRLAKQIGATEQAVNAWFRSRRVKMKR 65 5666789******************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 13.637 | 6 | 66 | IPR001356 | Homeobox domain |
SMART | SM00389 | 9.5E-6 | 7 | 70 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.11E-11 | 13 | 74 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.7E-9 | 16 | 65 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-11 | 21 | 70 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MARMLDDARA RQTGVDEDGA AILRGVFELE RRPDAATRRR LAKQIGATEQ AVNAWFRSRR 60 VKMKRKRKRR MLLFVLLVLG TAAGAFYAWN AWHQTAAARR RMEALGQTYK WMTRSGLPRP 120 YPGKMNVERY GKKKLQVETE RVITASGREE ERPVRYTVDN PKSSPLTKKP ETPRQKLERL 180 RVEASKKKMK GRVAPMAQPN RVRESTST* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 58 | 68 | RRVKMKRKRKR |
2 | 63 | 69 | KRKRKRR |
3 | 63 | 70 | KRKRKRRM |
4 | 64 | 69 | RKRKRR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_001422266.1 | 1e-97 | predicted protein | ||||
TrEMBL | A4SA11 | 2e-96 | A4SA11_OSTLU; Uncharacterized protein | ||||
STRING | ABP00583 | 4e-97 | (Ostreococcus 'lucimarinus') |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP9294 | 5 | 5 |