PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

fgenesh1_pm.chr_11_#_297

Organism

Ostreococcus sp. RCC809

Taxonomic ID

385169

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus

Family

MYB_related

Protein Properties

Length: 668aa MW: 70568.6 Da PI: 4.8478

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
fgenesh1_pm.chr_11_#_297	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.7	1.4e-09	37	87	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg....kgRtlkqcksrwqky 47 rg W++ E++ l++av+++G g W++ + Rt+ q+k++w+++ fgenesh1_pm.chr_11_#_297 37 RGYWSQPEEQALKRAVRKHGIGAWEKMRNDPEftalRSRTGVQLKDKWRNL 87 899*********************888888***************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	1.5E-8	36	90	IPR001005	SANT/Myb domain
Pfam	PF00249	1.2E-6	37	87	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.9E-14	37	95	IPR009057	Homeodomain-like
PROSITE profile	PS50090	8.653	37	88	IPR017877	Myb-like domain
SuperFamily	SSF46689	2.84E-13	37	92	IPR009057	Homeodomain-like
CDD	cd11660	1.01E-15	40	89	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 668 aa Download sequence Send to blast
MTSSHRGKSS GTSTSAKGTT KGTATKGGTA AAGGGARGYW SQPEEQALKR AVRKHGIGAW 60 EKMRNDPEFT ALRSRTGVQL KDKWRNLIKF QHLRKDEAAK VPYKSAVRAA NAAGKGGGAG 120 KTTANRASGK GATSAKTGAK GSTKQTKTAG KKGDAAATSA AGKKTTTVSR DALKKGDGGA 180 KASATTMTAK EKLKAKYGRG HADDEDDDRE YEILVDANAN AAGKVEDAIV AKLKEKRAGM 240 VNEVEHAESE LARMKTVVED AEAVYSSARA RVHEALMGED GEEEDDDEGG SFPADDVDWD 300 KYLHFGENED DEEDENVARA AEAAALAHEA VKTGQKRPSG EKRPSEKKPK TEADDDAEDG 360 DTTDREAESD EDVEEDPDSE DDDELDDEER AAKIANQVLA DAGLPPMHEI EHLLLAELKK 420 LEAANATVVH ARLALEAVDA EFAEALVNAH NAKTKETFTE DDDDLGKDFN MEDDEEIDSD 480 EADGIDEDEE IDSDEAEGDG DDDDEPAPPK NNKARAKAKS TAQNDSADAG GGSRVVEDRR 540 FGIYDARRYR SEAENDAEAA AQAAKGGGKA ASGAKRKAPS GGGGNKKTAK TASDANHEIW 600 YEKTSGAKAS KARAPAKKAA SRASAAPAAP GSMPSWRRKR AATRVTIGRP VAGPTSWAAI 660 GQHIINE*

Sequence ? help Back to Top

Protein Sequence Length: 668 aa Download sequence Send to blast

MTSSHRGKSS GTSTSAKGTT KGTATKGGTA AAGGGARGYW SQPEEQALKR AVRKHGIGAW  60
EKMRNDPEFT ALRSRTGVQL KDKWRNLIKF QHLRKDEAAK VPYKSAVRAA NAAGKGGGAG  120
KTTANRASGK GATSAKTGAK GSTKQTKTAG KKGDAAATSA AGKKTTTVSR DALKKGDGGA  180
KASATTMTAK EKLKAKYGRG HADDEDDDRE YEILVDANAN AAGKVEDAIV AKLKEKRAGM  240
VNEVEHAESE LARMKTVVED AEAVYSSARA RVHEALMGED GEEEDDDEGG SFPADDVDWD  300
KYLHFGENED DEEDENVARA AEAAALAHEA VKTGQKRPSG EKRPSEKKPK TEADDDAEDG  360
DTTDREAESD EDVEEDPDSE DDDELDDEER AAKIANQVLA DAGLPPMHEI EHLLLAELKK  420
LEAANATVVH ARLALEAVDA EFAEALVNAH NAKTKETFTE DDDDLGKDFN MEDDEEIDSD  480
EADGIDEDEE IDSDEAEGDG DDDDEPAPPK NNKARAKAKS TAQNDSADAG GGSRVVEDRR  540
FGIYDARRYR SEAENDAEAA AQAAKGGGKA ASGAKRKAPS GGGGNKKTAK TASDANHEIW  600
YEKTSGAKAS KARAPAKKAA SRASAAPAAP GSMPSWRRKR AATRVTIGRP VAGPTSWAAI  660
GQHIINE*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_001420545.1	1e-176	predicted protein
TrEMBL	A4S545	1e-174	A4S545_OSTLU; Uncharacterized protein
STRING	ABO98838	1e-175	(Ostreococcus 'lucimarinus')

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP4131	7	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49950.3	4e-10	telomere repeat binding factor 1