PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID fgenesh1_pm.chr_10_#_45
Organism
Ostreococcus sp. RCC809
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family E2F/DP
Protein Properties Length: 407aa    MW: 44696.7 Da    PI: 6.4307
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
fgenesh1_pm.chr_10_#_45genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP80.31.7e-25139218171
                  E2F_TDP   1 rkeksLrlltqkflklleksee.givtlnevakeLvse............dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                              r++k+Lr+++++   ++ek+e+ +++++neva+eLv e            d+kn rRR+YD+lNVL+al++i+k +k+ei w+g
  fgenesh1_pm.chr_10_#_45 139 REQKGLRHFSMR---VCEKVEQkKHTSYNEVADELVDElreastqndakfDEKNVRRRVYDALNVLMALEIITK-KKKEIFWNG 218
                              689*********...****9999***************************************************.9******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.109.7E-39138221IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013728.6E-31139218IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467852.31E-20141219IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023194.5E-23141218IPR003316E2F/DP family, winged-helix DNA-binding domain
SMARTSM011386.6E-47253406IPR014889Transcription factor DP, C-terminal
CDDcd144583.88E-34253343IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440742.59E-29253345No hitNo description
PfamPF087812.4E-27253346IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MDDEATVDTA ALRAILGEEN GGDDGGTVAT RYDASVDDAF GEPVFGTPDS GERAARGRAG  60
VGAREDDDGR ERWPRAEGRY DPEEAERRCQ EAAEVVAEVR RAVARERAAN RATASASACA  120
TPTPSRSRKT PATPTTIERE QKGLRHFSMR VCEKVEQKKH TSYNEVADEL VDELREASTQ  180
NDAKFDEKNV RRRVYDALNV LMALEIITKK KKEIFWNGYP PGYVKPGESP PRDASGAGPS  240
SRGTPMGMNA SDARIDELEK KNEQLAELVE QHDAIVALVR RNKEALERDN PRPTGIQLPF  300
VLIQTRQDAE VDVEISDDQR KVHFDFNQTP FQIHDGFHVL TKMINLHERR IPPLTNDQDA  360
TAATGAATAT AAPTPTPTPT PTKPRKSPAK CPTPTKSPAR GKRAKK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B3e-27138220690PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1190211RRRVYDALNVLMALEIITKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001420110.11e-135predicted protein
TrEMBLA4S3K41e-134A4S3K4_OSTLU; Uncharacterized protein
STRINGABO984031e-134(Ostreococcus 'lucimarinus')
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP15991417
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-50Transcription factor DP