PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | fgenesh1_pg.chr_5_#_192 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
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Family | YABBY | ||||||||
Protein Properties | Length: 164aa MW: 17414 Da PI: 10.8181 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 24.6 | 7.5e-08 | 82 | 120 | 122 | 160 |
YABBY 122 rqrvPsaynrfikeeiqrikasnPdishreafsaaaknW 160 r P+a+n f+k e+ r++a+ P + +e f+ a W fgenesh1_pg.chr_5_#_192 82 APRQPTAFNLFMKAEVVRVRAEKPGLGPKEVFTECAARW 120 3489******************************99999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47095 | 6.94E-8 | 69 | 122 | IPR009071 | High mobility group box domain |
Pfam | PF04690 | 1.1E-6 | 73 | 121 | IPR006780 | YABBY protein |
Gene3D | G3DSA:1.10.30.10 | 6.4E-6 | 83 | 161 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
MGSSDSDSDD RTGRSRDAAS DARALAEALA PCFASLADAC LRAHEAVCAI ADVAPTTTLT 60 RKRGTGADGK KLTKKQKREL RAPRQPTAFN LFMKAEVVRV RAEKPGLGPK EVFTECAARW 120 KAKKAAMGGA GGSLAGASTP VPVKEKKARK EKSHKKDKKH RDQ* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_001418036.1 | 8e-33 | predicted protein | ||||
TrEMBL | A4RXQ9 | 2e-31 | A4RXQ9_OSTLU; Uncharacterized protein | ||||
STRING | ABO96329 | 3e-32 | (Ostreococcus 'lucimarinus') |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP9255 | 4 | 5 |