PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | fgenesh1_pg.chr_20_#_21 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
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Family | NF-YA | ||||||||
Protein Properties | Length: 271aa MW: 27899.5 Da PI: 11.1958 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 56.8 | 7.4e-18 | 112 | 173 | 2 | 58 |
CBFB_NFYA 2 eplYVNaKQyqrIlkRRqkRakleeekk.....ldeksrkpylheSRhkhAlrRpRgsgGrF 58 +++YVNaKQy++Il+RR++Rak +++ ++ +r + SR+ hA++R Rg++G++ fgenesh1_pg.chr_20_#_21 112 AAVYVNAKQYNAILRRRKARAKEAAKAVgrltvREASGRGVAKYASRSAHAKKRVRGKDGKY 173 789*******************99844355654346789999******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 2.0E-10 | 109 | 176 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 19.806 | 110 | 176 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 1.4E-13 | 113 | 173 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
MVVSDALTST SAGGVHPMAF VYAANHHHHH HHRDGEGGAR NHHPATRRRM CEEDEGALAS 60 VVGVGGVVDP SAYERVTSGN PFGGELLATP AGATANARAR AHSRVLLPTT DAAVYVNAKQ 120 YNAILRRRKA RAKEAAKAVG RLTVREASGR GVAKYASRSA HAKKRVRGKD GKYLTRAELL 180 AGLGGPEAKA RAEAREVEIA ERAAKKKARE EKRERKAREK AALRASKVAA AAAAAAASAS 240 ASASAAPAPA PAPAPAPAPA PAPTTTTVAV * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 161 | 167 | AKKRVRG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP13301 | 2 | 2 |