PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | fgenesh1_pg.chr_20_#_144 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
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Family | bHLH | ||||||||
Protein Properties | Length: 262aa MW: 28538.1 Da PI: 5.0085 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.6 | 6.8e-11 | 105 | 155 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r++++ rE+rRRd +Ns+feeL +l + + K +Ka+++ A++ Ik+L+ fgenesh1_pg.chr_20_#_144 105 RKTKSTREKRRRDVLNSRFEELIAVLEPG---SMMKADKATVVVAATQLIKQLR 155 999*************************8...89******************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.84E-11 | 97 | 164 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.61E-8 | 101 | 157 | No hit | No description |
PROSITE profile | PS50888 | 12.055 | 103 | 154 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.3E-9 | 105 | 173 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.8E-8 | 105 | 154 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.4E-5 | 109 | 160 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MANQTGRVAT DEGLIARDDA KVLASNDWLN DFFTHFDGEE SPFDIAAAFD VGTGTLASGI 60 QEKPVGVTST AGEECPKKRK AEDGEEKVEA NQAQARSYTL SEGARKTKST REKRRRDVLN 120 SRFEELIAVL EPGSMMKADK ATVVVAATQL IKQLRAEHSR LANMIMHFQE DNIRQAESAR 180 TLAAERDALV KEKTELLHEK LRIEAQLQGF LASMPFASPV EGVTAPAAKT MRGNAAWTVP 240 TPFLPANEEA EEDVTLRAPV A* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022841354.1 | 2e-75 | Myc-type, basic helix-loop-helix (bHLH) domain | ||||
TrEMBL | A0A096PAY9 | 4e-74 | A0A096PAY9_OSTTA; Myc-type, basic helix-loop-helix (BHLH) domain | ||||
STRING | A0A096PAY9 | 6e-75 | (Ostreococcus tauri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP5460 | 6 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G54680.1 | 6e-12 | bHLH family protein |