PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID fgenesh1_pg.chr_1_#_338
Organism
Ostreococcus sp. RCC809
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family C3H
Protein Properties Length: 612aa    MW: 68273.2 Da    PI: 7.0271
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
fgenesh1_pg.chr_1_#_338genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.34.1e-0687110326
                              S---SGGGGTS--TTTT.T-SS-SS CS
                  zf-CCCH   3 telCrffartGtCkyGd.rCkFaHg 26 
                               +lC++f+r G C +G+ +CkF+H+
  fgenesh1_pg.chr_1_#_338  87 VRLCHDFLR-GACAFGEeKCKFSHD 110
                              58*******.******648*****7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.89684112IPR000571Zinc finger, CCCH-type
SMARTSM003566.2E-485111IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.7E-488112IPR000571Zinc finger, CCCH-type
SMARTSM003564.9122147IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.714125150IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.20.20.708.4E-74249491IPR013785Aldolase-type TIM barrel
CDDcd028013.52E-95253486No hitNo description
SuperFamilySSF513959.52E-65253536No hitNo description
PfamPF012071.3E-53256512IPR001269tRNA-dihydrouridine synthase
PROSITE patternPS011360337355IPR018517tRNA-dihydrouridine synthase, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008033Biological ProcesstRNA processing
GO:0055114Biological Processoxidation-reduction process
GO:0017150Molecular FunctiontRNA dihydrouridine synthase activity
GO:0046872Molecular Functionmetal ion binding
GO:0050660Molecular Functionflavin adenine dinucleotide binding
Sequence ? help Back to Top
Protein Sequence    Length: 612 aa     Download sequence    Send to blast
MTTSTPTDDA PTTSTPTTLL SWTPPTAREL FDAGSVVVRR EFLSAPPPRA PARDDAEEGR  60
PRGTFGGFTK RYKRENRDRR DGGAREVRLC HDFLRGACAF GEEKCKFSHD VDAYVKSKAP  120
DLPGTCTFVN REGGCPYGVK CRYLGSHDGN TKEAEGETVA LEPPKTVVAE MNFFDRDVMK  180
RLRKKTYDFS RANTIVRDVL GQKTEDGGGD DAGGDDAGES AAKRAKKDDE CTDTGAFTKT  240
RPCEKKQIDF KDKLYLAPLT TVGNLPFRRL CKTLGADVTC GEMALATNLL QGQQGEWALL  300
RRHTSEDIFG VQICGGYPDS VTRCCQLLEE NIDVDFIDIN MGCPIDMICQ KGYGSMMLEK  360
PKKMAHVIRA ASAVLNKCSL TFKTRIAYNE KARVAHTISP KVAEWGAAAM TLHGRTRAQR  420
YRSLADWEYI KLTKEVSSVP LIGNGDVYNQ KDYYTHLEEH AVDTCMLARG ALIKPWLFTE  480
IKERRDWDIS SSERFDIFKS FASYGLEHWG SDTLGVEQTR KYFLEWMSFT YRYTPIGLVD  540
RAFGDVSMTQ RPPAFVGRDD LETLMASPNA EDWVKISTML LGPPPEGFKF QPKHKSNAYE  600
TGVAQGDMDQ G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ei9_A3e-2724748624261tRNA-dihydrouridine synthase B
6ei9_B3e-2724748624261tRNA-dihydrouridine synthase B
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001415794.10.0predicted protein
SwissprotQ7ZWS11e-174DUS3L_XENLA; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
TrEMBLA4RQU50.0A4RQU5_OSTLU; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]
STRINGABO940860.0(Ostreococcus 'lucimarinus')
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP58777