PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID fgenesh1_kg.chr_19_#_5_#_CBPU_CBPX_CBPY_730_1
Organism
Ostreococcus sp. RCC809
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family bHLH
Protein Properties Length: 156aa    MW: 17775.4 Da    PI: 9.9531
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
fgenesh1_kg.chr_19_#_5_#_CBPU_CBPX_CBPY_730_1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH261.6e-083483254
                                                   HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                                            HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                                                   ++a+  rE+ RRd +Ns+++eL  +l       s K + a+ +  A++ Ik L
  fgenesh1_kg.chr_19_#_5_#_CBPU_CBPX_CBPY_730_1 34 KKAKRTREKLRRDTLNSRYQELSAVLELG---ESMKSDQAALVSAATDSIKRL 83
                                                   78999***********************8...8******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.27E-83191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.60E-53186No hitNo description
PROSITE profilePS5088810.9313283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-834104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.4E-63483IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00393889IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MAHLGWRLEE DDWSKAPSHP TTLKPSTALC ERAKKAKRTR EKLRRDTLNS RYQELSAVLE  60
LGESMKSDQA ALVSAATDSI KRLRAEHARL ANTIMRFQDE KSQKADLLRA LAMEREQLVK  120
EKAQLLEEKL HVEGQLQRFL TRMPFGSLMD DMVAT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001422567.15e-42predicted protein
TrEMBLA4SB731e-40A4SB73_OSTLU; Uncharacterized protein
STRINGABP008842e-41(Ostreococcus 'lucimarinus')
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP546069
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.13e-09bHLH family protein