PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | e_gw1.6.1381.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
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Family | MYB_related | ||||||||
Protein Properties | Length: 252aa MW: 28493 Da PI: 9.6624 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.2 | 1.6e-07 | 180 | 218 | 2 | 40 |
SSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqc 40 g W +eE l+v++ k++G g W + a++++ gR ++qc e_gw1.6.1381.1 180 GDWDEEEIALFVEVAKKYGCGdKWGLFASHIP-GRVGYQC 218 68******************************.******* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.64E-8 | 169 | 225 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 7.863 | 174 | 226 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-7 | 175 | 226 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 7.1E-6 | 180 | 218 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.85E-4 | 182 | 218 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
TYQERVRRNK ELMRTLRVTE AKQAFDESVR ASAKTNPNRS KKTKTKRERD APAPEPTRRS 60 ARVRGESSRA KVEIGEDDKP MGMNDDLQCH LTCDEYCERL GIELGPKMSG GFRGWVEESV 120 RETLGIAASA NEAWERNGGG KSDRRPGKGE AARDHAKRML YKNPNAYFYR HTAGEEQKNG 180 DWDEEEIALF VEVAKKYGCG DKWGLFASHI PGRVGYQCSA AYRHVVIPRG LLRDDAWRMT 240 LSGEAVWVGR R* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_001418441.1 | 1e-117 | predicted protein, partial | ||||
TrEMBL | A4RYS1 | 1e-116 | A4RYS1_OSTLU; Uncharacterized protein (Fragment) | ||||
STRING | ABO96734 | 1e-116 | (Ostreococcus 'lucimarinus') |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP4636 | 7 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02320.2 | 2e-07 | myb domain protein 3r-5 |