PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID e_gw1.4.293.1
Organism
Ostreococcus sp. RCC809
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family CO-like
Protein Properties Length: 418aa    MW: 44859.5 Da    PI: 5.3903
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
e_gw1.4.293.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.64.5e-07138537
       zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                   +C+ ++   ++++C +++++lC+ C +  H+       H
  e_gw1.4.293.1  1 MCEGCSGR-ATWYCAQDEVCLCDACDERVHSAnaiarmH 38
                   5*****99.*********************656677774 PP
2CCT64.72.6e-22304347144
            CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                    R ++l R+keKrk+R+F+K irY+sRKa A++RpR+KG+Fvk +
  e_gw1.4.293.1 304 RLERLARWKEKRKHRNFNKVIRYQSRKASADNRPRIKGKFVKIQ 347
                    889**************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003360.0011143IPR000315B-box-type zinc finger
CDDcd000211.18E-6143No hitNo description
PROSITE profilePS501198.574143IPR000315B-box-type zinc finger
PfamPF062031.7E-17304345IPR010402CCT domain
PROSITE profilePS5101714.684304346IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MCEGCSGRAT WYCAQDEVCL CDACDERVHS ANAIARMHHR QRLERDPQDA DSRRASEGPE  60
DGDAGAARPP AGGGGAYAAD GAMGGVTTDD FIKMCDGFLN DDVMPSSSFP LGTLDERFWN  120
DNLGVPEREI LDTERLLSNP YGANEVRTAN SGLGTPTPLT PPPPAKAASE NSSDRRSDSV  180
GMSASEISAL RRVGRDDGKS GVLGPIADDS ALDYVERNGS QSVQDAEQSK ARPVDFHALA  240
GKLGAAAVNG KAAAADDYTA VEDSRARGET LMKRFNESNP GPSGANLPRP APTTYSGMPQ  300
PQTRLERLAR WKEKRKHRNF NKVIRYQSRK ASADNRPRIK GKFVKIQSVP DLSAMRGAGT  360
PVDSDEEDDA KNREDSRDTI RELGLDRGLP PPPSLTKIKH GLVSSASMPS FSAFQDD*
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP6111112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15850.15e-11CONSTANS-like 1