PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | e_gw1.3.601.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
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Family | GATA | ||||||||
Protein Properties | Length: 237aa MW: 24491.2 Da PI: 7.6998 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 50.1 | 3.8e-16 | 154 | 188 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+ ++p+WRrgp +++LCnaCG +yr++++ e_gw1.3.601.1 154 CDHCGAVDSPQWRRGPASKPMLCNACGTRYRRTNS 188 9***************99999**********9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 12.532 | 148 | 203 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 1.8E-8 | 148 | 202 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.43E-11 | 149 | 192 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 8.1E-12 | 149 | 197 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 5.28E-12 | 153 | 205 | No hit | No description |
Pfam | PF00320 | 1.4E-13 | 154 | 187 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MDAEDDAVRE TTKAAAAAAA RAPERRWYRM VKMHDHGVCT TAVADAELAM LEASILRSAV 60 PSGCEVMVDG GGAGAGWNAD APCSSGEEGA RGRWAPDDVE YEECAVSGGF VGGAQDDSAS 120 AWERGGVASV AHATTHATTN AVASNGHMKP GGPCDHCGAV DSPQWRRGPA SKPMLCNACG 180 TRYRRTNSLG PAPSSRMATP DKRKNVAQND ARGKKNARCA VGGDNGKFSR ARAVVF* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_001416579.1 | 7e-75 | predicted protein | ||||
TrEMBL | A4RTZ2 | 2e-73 | A4RTZ2_OSTLU; Uncharacterized protein | ||||
STRING | ABO94872 | 3e-74 | (Ostreococcus 'lucimarinus') |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP450 | 15 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17570.3 | 1e-11 | GATA transcription factor 26 |