PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID e_gw1.3.561.1
Organism
Ostreococcus sp. RCC809
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family MYB_related
Protein Properties Length: 273aa    MW: 29702.8 Da    PI: 9.9669
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
e_gw1.3.561.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding301.2e-09179228148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 
                      r r++++E + l+++v+++G g+W+ I +     ++R++ ++k++w++++
    e_gw1.3.561.1 179 RERFSKDEALDLIKGVELYGLGQWAQIKQSYFvsTTRSGVDLKDKWRNLM 228
                      789**************************9999***************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542368.98E-1164149IPR029071Ubiquitin-related domain
PROSITE profilePS5005310.9265147IPR000626Ubiquitin domain
Gene3DG3DSA:3.10.20.903.2E-965153No hitNo description
CDDcd017692.74E-477142No hitNo description
PROSITE profilePS5129412.451174232IPR017930Myb domain
SuperFamilySSF466892.77E-12177230IPR009057Homeodomain-like
SMARTSM007172.0E-8178230IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-11178228IPR009057Homeodomain-like
PfamPF002498.4E-8179227IPR001005SANT/Myb domain
CDDcd116603.81E-18181228No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MTRATKRKAS VPRASSRDGA CERSRDVTAT RGAAKAASGS LAAAKRKADA DPFAFDADDM  60
TDAMFGVIVK WVNRGKTTSE WAFQAASDTT VGQLKSMVDE TTDGILKPHA MVMTHKSKSM  120
DDSGALLTDY GISDGSEVVL ILNHEGNAVP PAPTMVAEFP GEPVTKKAKK EKTGAEKKRE  180
RFSKDEALDL IKGVELYGLG QWAQIKQSYF VSTTRSGVDL KDKWRNLMTA AKRPPGFKFR  240
VDYLNEPELL SRVLQVNEEA MIKVRNVNSG LV*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022838480.11e-103Ubiquitin supergroup
TrEMBLA0A090M4P11e-101A0A090M4P1_OSTTA; Ubiquitin supergroup
STRINGA0A090M4P11e-102(Ostreococcus tauri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP736355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.25e-09TRF-like 6