PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | e_gw1.3.205.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
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Family | AP2 | ||||||||
Protein Properties | Length: 251aa MW: 28791.6 Da PI: 10.1959 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 36 | 1.7e-11 | 47 | 108 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.....kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+ +GV+++k + r++A+I+d e++ +r k+++lg + + eAa+a++ a +k++g e_gw1.3.205.1 47 SKWRGVTRHKITSRFEAHIWDaNFERKpsssrRRgKQIYLGGWKHELEAARAYDLALLKFFG 108 5679*****************88888888885448**********99***********9987 PP | |||||||
2 | AP2 | 34.5 | 5e-11 | 166 | 219 | 3 | 56 |
AP2 3 ykGVrwdkkrgr...WvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 ++GV+ +k +++ W+A+I + +++++lg++ t+ eAa+ ++ a+ +++ge e_gw1.3.205.1 166 FRGVTSHKGKNSkgrWEARIGRVLG---NQYIYLGTYKTELEAARSYDIAAISFRGE 219 788876664444444****988422...5**********99*************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 7.19E-10 | 47 | 110 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 8.9E-9 | 48 | 110 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.1E-5 | 48 | 106 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.8E-13 | 48 | 135 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 14.473 | 48 | 129 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.16E-19 | 164 | 228 | No hit | No description |
SuperFamily | SSF54171 | 4.45E-14 | 164 | 228 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.1E-15 | 165 | 227 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.542 | 165 | 226 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.1E-25 | 165 | 232 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.9E-6 | 166 | 219 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007276 | Biological Process | gamete generation | ||||
GO:0010492 | Biological Process | maintenance of shoot apical meristem identity | ||||
GO:0042127 | Biological Process | regulation of cell proliferation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MFDFECDWEL VFNEQAEAKL KDLAQHRLKK DRAVALTKPL KSAKSSSKWR GVTRHKITSR 60 FEAHIWDANF ERKPSSSRRR GKQIYLGGWK HELEAARAYD LALLKFFGPQ EPCSGNSPQE 120 ELFHKLNFPE EDYSEEIKTM QEYKCADWVA QIRRRSSGFA RGVSAFRGVT SHKGKNSKGR 180 WEARIGRVLG NQYIYLGTYK TELEAARSYD IAAISFRGEK AVTNFPISNY TEEEIARAKL 240 GAKISEAKKR * |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00088 | SELEX | Transfer from AT4G37750 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003078132.2 | 3e-90 | DNA-binding domain | ||||
TrEMBL | A0A090M4P6 | 7e-89 | A0A090M4P6_OSTTA; DNA-binding domain | ||||
STRING | A0A090M4P6 | 1e-89 | (Ostreococcus tauri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP56 | 16 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72570.1 | 1e-57 | AP2 family protein |