PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID e_gw1.2.67.1
Organism
Ostreococcus sp. RCC809
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family MYB_related
Protein Properties Length: 862aa    MW: 95400.4 Da    PI: 5.9434
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
e_gw1.2.67.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.19.4e-09224255335
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgR 35 
                      +WT+e d  l+ av+++G + W +I + m+  R
     e_gw1.2.67.1 224 AWTPEQDAALLAAVTEHGER-WQLITQLMQSAR 255
                      7*******************.********9333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.60.120.6209.4E-46109No hitNo description
SuperFamilySSF511972.56E-57110No hitNo description
SuperFamilySSF466891.56E-6195252IPR009057Homeodomain-like
PfamPF057211.0E-6204450IPR008775Phytanoyl-CoA dioxygenase
PROSITE profilePS512949.306217275IPR017930Myb domain
SMARTSM007173.4E-4221273IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-7222266IPR009057Homeodomain-like
CDDcd001674.58E-4224271No hitNo description
PfamPF002495.0E-6224257IPR001005SANT/Myb domain
SuperFamilySSF511978.7E-13313452No hitNo description
Gene3DG3DSA:2.60.120.6207.1E-10314451No hitNo description
SuperFamilySSF534484.41E-34498701IPR029044Nucleotide-diphospho-sugar transferases
Gene3DG3DSA:3.90.550.103.9E-39508753IPR029044Nucleotide-diphospho-sugar transferases
PfamPF005359.3E-19511681IPR001173Glycosyltransferase 2-like
Gene3DG3DSA:3.40.50.7206.7E-4754806IPR016040NAD(P)-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 862 aa     Download sequence    Send to blast
MLDRSTLRQR FIEDGLVVVD DAIPRDVVDD IVSQLQRELA DPVVRPESGS SARASSGDGV  60
DLEDPGTWPR GNARRVIEVV PPGEGRAWAA VLDSPALRDG LDAVLGEEAW ELETNEVDAS  120
RGTCEPRHWY CPITFPERDS EEAELRLAEE RAKRARAAQS EKRRKTSDES GSCAPTPTMW  180
TACMSRDVQK LREDGSNWDE IAKMVSTSEL TWTAKQCEEH HQSAWTPEQD AALLAAVTEH  240
GERWQLITQL MQSARSGCNK KQVRGRATML LDERSANMVN VESDHVVGGA ETRGVDAAKS  300
WHPVNRRRML NRGWHLDIGP GFANDAVRTP EGHPYQGAII LIFLSDCELG GGGTAFIKGS  360
HRWVASHLRQ KKGVVHSDLN SWAIELVREL SNGGRLPLSY EMDARDAENA LSRDDIDGVI  420
EQLSGKAGTV ALLHPWLIHS GTSNLTSKVR LLANGMARIK QEIFDKEGIP ILNEVVSGKP  480
TMKRTLDFLP STSPTDQSVR PPVDASLPSV SIILPVHNAS RWLDEALSSV CAQTYRGPIE  540
VSIFDDGSTD DSAATIRKWL ETFERIGLPY VANGSRWRES ANFVAEDAPN CGIGFCRNRC  600
IEQSGSDILV FLDSDDVMMP NRLDLQVPLA AANRTAIVGG CWKRYPSGST EHYEAWANMM  660
TQRELHLEQF RECTVLLPTW CMARSIAQAV GGFVEALPGS ENSKHDLPSI LRAGDYPHNP  720
VLLYRWSPQS ASSRCSRRRL LQVRAQAFEE RILSTPSWEK FVVWGAGRDA KNFMNEISSS  780
ARTRVAAMID IDPRKTGRQY TNSQVPDQSP VPIVHFSKAP RGLPVVVCVA KRRKGSGHEG  840
ELESNVETLG LIEGTTLWYF N*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022840794.10.0Glycosyl transferase, family 2
TrEMBLA0A090N4Q20.0A0A090N4Q2_OSTTA; Glycosyl transferase, family 2
STRINGA0A090N4Q20.0(Ostreococcus tauri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP721922