PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID e_gw1.17.258.1
Organism
Ostreococcus sp. RCC809
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family C3H
Protein Properties Length: 255aa    MW: 27565.2 Da    PI: 8.3456
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
e_gw1.17.258.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.99.4e-1076101227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     kt+lCr+f+    C++GdrC+FaHg+
  e_gw1.17.258.1  76 KTRLCRNFQSPEGCRFGDRCSFAHGK 101
                     9***********************96 PP
2zf-CCCH31.92.2e-10212236226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     kt++C  +++ G C yGd+C+FaHg
  e_gw1.17.258.1 212 KTKICALWQKDGSCMYGDKCHFAHG 236
                     89**********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.2821745IPR000571Zinc finger, CCCH-type
SMARTSM003560.321944IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-52044IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.4E-52143IPR000571Zinc finger, CCCH-type
PfamPF146080.412542No hitNo description
Gene3DG3DSA:4.10.1000.103.9E-1571105IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-873105IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.20674102IPR000571Zinc finger, CCCH-type
SMARTSM003560.009274101IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-876101IPR000571Zinc finger, CCCH-type
SMARTSM003222.1E-7124196IPR004087K Homology domain
PROSITE profilePS5008414.403125191IPR004088K Homology domain, type 1
SuperFamilySSF547914.24E-13128195IPR004088K Homology domain, type 1
PfamPF000131.5E-10130192IPR004088K Homology domain, type 1
CDDcd001054.98E-10130191No hitNo description
Gene3DG3DSA:3.30.1370.102.5E-12130195IPR004088K Homology domain, type 1
SMARTSM003561.3E-4210237IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.075210238IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.13E-9210241IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.2E-14211242IPR000571Zinc finger, CCCH-type
PfamPF006425.1E-8212236IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MSGVDESARG SDPEQTGKSD KLCVKFFSIH GCAYGDECHY LHTYRPGLPV PARPAPLPYV  60
YTTNAYGAAQ ANEKMKTRLC RNFQSPEGCR FGDRCSFAHG KGELRSDDLN GDGTMENLET  120
HQGFGKAVLV PVPQSQVGAI VGKAGSSIAQ VSAASGAKVS MLSAEYTNFD GDRLCRLVGS  180
PFDVQRAKEL IYHRLAVGKV KKRDTKPPRP CKTKICALWQ KDGSCMYGDK CHFAHGIAEL  240
QKVDTNEVAT NEVA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003084052.21e-101Zinc finger, CCCH-type
TrEMBLA0A096P9K71e-100A0A096P9K7_OSTTA; Zinc finger, CCCH-type
TrEMBLA0A454XTM71e-100A0A454XTM7_OSTTA; Uncharacterized protein
STRINGA0A096P9K71e-101(Ostreococcus tauri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1347533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.13e-19C3H family protein