PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | e_gw1.16.472.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
|
||||||||
Family | Whirly | ||||||||
Protein Properties | Length: 173aa MW: 18106.5 Da PI: 9.9804 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 190.7 | 2.4e-59 | 17 | 156 | 1 | 138 |
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelana..taerkydWekkqsfalsatevaelvd.laskesceffhdpaakgsneGkvrk 92 +++k+kaa+k+kavrptfe+++ g+ ++kraGg+llelana ++ r ydW +k sf+ls+te+ael+d las ++c+ffhdp a+++n+G v+k e_gw1.16.472.1 17 GIFKSKAAMKLKAVRPTFETDANGRKIMKRAGGVLLELANAasAGSRSYDWTNKSSFMLSGTEAAELADrLASDGACSFFHDPNAGSANRGSVNK 111 79*************************************9833589************************************************* PP Whirly 93 alkvePlpdGs.Glfvnlsvtnslvkgnesf.svPvskaefavlrsll 138 a+kveP+pdGs G+fvnls+t + g + f svPvs++e+a++r++l e_gw1.16.472.1 112 AFKVEPMPDGSgGVFVNLSTTAN---GTKAFhSVPVSYGESAAIRRVL 156 ***********9********988...777777*************987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.30.31.10 | 6.0E-50 | 6 | 170 | IPR009044 | ssDNA-binding transcriptional regulator |
SuperFamily | SSF54447 | 4.71E-26 | 10 | 169 | IPR009044 | ssDNA-binding transcriptional regulator |
Pfam | PF08536 | 1.5E-46 | 18 | 155 | IPR013742 | Plant transcription factor |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006281 | Biological Process | DNA repair | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005739 | Cellular Component | mitochondrion | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 173 aa Download sequence Send to blast |
MRPTTTNASG GVYVDYGIFK SKAAMKLKAV RPTFETDANG RKIMKRAGGV LLELANAASA 60 GSRSYDWTNK SSFMLSGTEA AELADRLASD GACSFFHDPN AGSANRGSVN KAFKVEPMPD 120 GSGGVFVNLS TTANGTKAFH SVPVSYGESA AIRRVLAFLV PRVLGFDDVF AP* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1l3a_A | 5e-28 | 12 | 166 | 38 | 190 | p24: plant transcriptional regulator PBF-2 |
1l3a_B | 5e-28 | 12 | 166 | 38 | 190 | p24: plant transcriptional regulator PBF-2 |
1l3a_C | 5e-28 | 12 | 166 | 38 | 190 | p24: plant transcriptional regulator PBF-2 |
1l3a_D | 5e-28 | 12 | 166 | 38 | 190 | p24: plant transcriptional regulator PBF-2 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_001421958.1 | 1e-79 | predicted protein, partial | ||||
TrEMBL | A4S8W4 | 3e-78 | A4S8W4_OSTLU; Uncharacterized protein (Fragment) | ||||
STRING | ABP00252 | 5e-79 | (Ostreococcus 'lucimarinus') |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP2026 | 15 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G02740.2 | 2e-27 | ssDNA-binding transcriptional regulator |