PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID e_gw1.13.188.1
Organism
Ostreococcus sp. RCC809
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family MYB
Protein Properties Length: 386aa    MW: 41988 Da    PI: 10.9072
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
e_gw1.13.188.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.84.5e-12546647
                     HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  6 teEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqky 47
                     ++Ede l + +k+lGg+ +W++Ia+ +  gR+ k+c++rw + 
   e_gw1.13.188.1  5 AQEDEMLRRQIKKLGGPgNWTAIAEALR-GRSSKSCRLRWCNQ 46
                     58**************************.***********985 PP
2Myb_DNA-binding53.17.1e-175397147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg++T+eEd+ +++ ++ +G++ W+ I+r m+ gRt++q+k+r+++ 
   e_gw1.13.188.1 53 RGPFTKEEDDTILEQHAIHGNK-WAVISRAMP-GRTDNQVKNRFNST 97
                     89********************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.151147IPR017930Myb domain
SMARTSM007171.1E-5549IPR001005SANT/Myb domain
PfamPF002492.7E-10546IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-20554IPR009057Homeodomain-like
CDDcd001671.08E-9545No hitNo description
SuperFamilySSF466894.4E-2727104IPR009057Homeodomain-like
PROSITE profilePS5129425.8948102IPR017930Myb domain
SMARTSM007172.0E-1652100IPR001005SANT/Myb domain
PfamPF002497.5E-155396IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.0E-2455100IPR009057Homeodomain-like
CDDcd001671.28E-115598No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
FHARAQEDEM LRRQIKKLGG PGNWTAIAEA LRGRSSKSCR LRWCNQLNPN VKRGPFTKEE  60
DDTILEQHAI HGNKWAVISR AMPGRTDNQV KNRFNSTLRR LIASQKKDRA WASSVANSTS  120
MAPVSPKPKA PSRPQSRLGD NRSEGTNAQS THSRSKRERS LSPGESVEQA SSPKRSRNAE  180
RSKLADRRAT GSSGDSRGNA PRRPSSTALE RQGLDNLIQA SLLELERLKT TKGEIHEWGV  240
MPYGGLRDCG TPEPTRSEED GVVPTLLAPK PKRGGFSVVV PSDMYDWRSH SPALSAPFLA  300
GLKRVDSLAS LNGDAPSRPS SAMSVGAAMQ NAPSMLQSDS WYARMLDNLG ARKAESSEAS  360
DKSVVEVKTE SFAKVNQPNG ASVKA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C3e-24610264159MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-24610264159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022840149.10.0SANT/Myb domain
TrEMBLA0A1Y5IDH00.0A0A1Y5IDH0_OSTTA; MYBY1 protein
STRINGA0A090M7260.0(Ostreococcus tauri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1516114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.11e-36myb domain protein 109