PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID e_gw1.1.649.1
Organism
Ostreococcus sp. RCC809
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family ARR-B
Protein Properties Length: 306aa    MW: 33407.7 Da    PI: 8.7424
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
e_gw1.1.649.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like93.12.3e-29141194155
        G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                    kpr++W+peLH++Fv av+qL G++kA+Pk+il+lm+v+gLt+e+v+SHLQkYRl
  e_gw1.1.649.1 141 KPRVVWSPELHAQFVTAVNQL-GIDKAVPKRILDLMGVQGLTRENVASHLQKYRL 194
                    79*******************.********************************8 PP
2Response_reg40.11.9e-1415653109
                    CTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
   Response_reg  53 mpgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                    mp+mdG++ll+ i++e  ++p+++++a+++++ +l+ +  Ga d+l Kp+ +eel++
  e_gw1.1.649.1   1 MPDMDGFKLLEIIQFEL-SIPVLMMSANSDSSVVLRGIIHGAVDYLLKPVRIEELRN 56 
                    9************9977.*************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001562.47E-15161No hitNo description
PROSITE profilePS5011024.823162IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23007.2E-19185No hitNo description
PfamPF000721.9E-10157IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521723.98E-16168IPR011006CheY-like superfamily
PROSITE profilePS5129412.203138197IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.7E-31139199IPR009057Homeodomain-like
SuperFamilySSF466893.58E-20139198IPR009057Homeodomain-like
TIGRFAMsTIGR015575.7E-25141194IPR006447Myb domain, plants
PfamPF002494.2E-8143193IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010082Biological Processregulation of root meristem growth
GO:0010119Biological Processregulation of stomatal movement
GO:0010150Biological Processleaf senescence
GO:0071368Biological Processcellular response to cytokinin stimulus
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MPDMDGFKLL EIIQFELSIP VLMMSANSDS SVVLRGIIHG AVDYLLKPVR IEELRNIWQH  60
IVRRDYTTKS PGSDEATTSS PNKRLKLSNS KSDEIDRSMN EAASSSKRKK PAKKGGKTGK  120
ESEKREEGAE KKSAEGAGAK KPRVVWSPEL HAQFVTAVNQ LGIDKAVPKR ILDLMGVQGL  180
TRENVASHLQ KYRLYLKRIQ GTESNSRNGT NAARHASNDG MPQSRPKDVP EKSTKTRAEA  240
FSADDTIFRG DDLSLPGDLL VGDEVGYDDP GFDPALLTPL DIDKVGKGDG LGATDQMLNF  300
FLSGD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A6e-23141197157Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00054PBMTransfer from AT4G16110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022840333.11e-124Signal transduction response regulator, receiver domain
SwissprotB8AEH18e-65ORR23_ORYSI; Two-component response regulator ORR23
TrEMBLA0A1Y5HZJ91e-130A0A1Y5HZJ9_OSTTA; Uncharacterized protein
STRINGA0A096P7X71e-124(Ostreococcus tauri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP12201516
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.13e-55response regulator 2