PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID e_gw1.1.306.1
Organism
Ostreococcus sp. RCC809
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family MYB_related
Protein Properties Length: 531aa    MW: 55828.9 Da    PI: 11.2037
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
e_gw1.1.306.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.81.8e-11373412344
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                      +W +e+ el+++a +q+G++ +++Iar ++ gRt+ q+k ++
    e_gw1.1.306.1 373 KWNKEDTELFYRAMTQFGTD-FSLIARLFP-GRTRRQVKRKY 412
                      8*******************.*********.*********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159631.2E-26364448No hitNo description
Gene3DG3DSA:1.10.10.602.3E-7367412IPR009057Homeodomain-like
PROSITE profilePS5129310.215369420IPR017884SANT domain
SMARTSM007176.0E-9370418IPR001005SANT/Myb domain
SuperFamilySSF466898.22E-11372415IPR009057Homeodomain-like
CDDcd001672.63E-8373412No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MKDAGDDDAG RAVTRKGGTE GKTAKQARRA SSFAPNVGAR GKSRLRGAKA RDDDARESPS  60
ASGGEDSGGR GNDGSGRSTP ERPSSRLGRV VAESARKKSR LGAAGASAAG SRLRTARESG  120
TPVGRKAPTA MGDGVATPTS AVLRRVSAPV GARSPAPSRT SKQMVPALAR LEPKLASPSP  180
TPTPASPLAL ATGGAVEPAS ASPGSLPIVA VPPPMAIPAH RWVRSAGSTR GGRVGEGSRR  240
DALEASTSYA DDPAMTIRDI IRQKSAEERV KEAKTRVLKK ANKRPMPDFG KKKAAAAALA  300
APAPLAPAPP AAKPTVMAPQ VQVIDGNIVI NPQSLTVNAA AEKDTGLAEF KRVEENGTRL  360
NSATYSNRAK AEKWNKEDTE LFYRAMTQFG TDFSLIARLF PGRTRRQVKR KYLIEDRADP  420
RRVEAAIQNR EQDPAMYKNL ISVLKAQAAE RMESSIDARV VLDGDNGASN PAAEDVPDPA  480
SEDDAEKATM EEEPARTTQG KKRATRGARS TAAAKPEAPR ARKSRRTAKK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5n9g_C3e-1331645622165Transcription factor TFIIIB component B'' homolog
5n9g_H3e-1331645622165Transcription factor TFIIIB component B'' homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1277283LKKANKR
2404410RRQVKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003074551.21e-157SANT/Myb domain
TrEMBLA0A090N2T91e-156A0A090N2T9_OSTTA; SANT/Myb domain
TrEMBLA0A1Y5I2U21e-156A0A1Y5I2U2_OSTTA; Transcription initiation factor TFIIIB, Bdp1 subunit
STRINGA0A090N2T91e-157(Ostreococcus tauri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP377099
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.16e-19MYB_related family protein