PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EuGene.1500010018
Organism
Ostreococcus sp. RCC809
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family C3H
Protein Properties Length: 301aa    MW: 31030 Da    PI: 10.3421
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EuGene.1500010018genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.59.8e-08262282526
                        --SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                        +C+ff+r G C+ G++Ck++Hg
  EuGene.1500010018 262 PCMFFQR-GSCRAGESCKYSHG 282
                        7******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.183257284IPR000571Zinc finger, CCCH-type
SMARTSM003565.2E-5258283IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.94E-6258282IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-4262282IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-5262282IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MHSLPRRHTP RRRLDSTRMD DDDVTMTTTT RTADDEDASI AGARGRGGGG GNGGGRGHRR  60
ERGDRRPGGR GSDNERRHRE GTTRDFERQH RPFRERAKTR PGWAPTGAID PSSGRPEHSG  120
QCEGCKVSTV VNFRPVVGGN PPLCGVCLDS LKAATGAGVG TEGERAGGPH RGGGRGRRGA  180
ERSRGGFGFG GRGGGGFHPY GAHGGGQMVM VDPRMMAAYG GHGGGMMAAY GGVPGAGGGK  240
HRSWTRDGAA AGERDVDTSG IPCMFFQRGS CRAGESCKYS HGGASDAVGG GDGDDAAMTS  300
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14555RGGGGGNGGGR
2189195GGRGGGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022840395.14e-59Zinc finger, CCCH-type
TrEMBLA0A096P8789e-58A0A096P878_OSTTA; Zinc finger, CCCH-type
STRINGA0A096P8781e-58(Ostreococcus tauri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP647955