PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EuGene.1200010214
Organism
Ostreococcus sp. RCC809
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family MYB_related
Protein Properties Length: 482aa    MW: 53482.1 Da    PI: 8.5666
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EuGene.1200010214genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.32.6e-11390442147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqky 47 
                        r rW++eE+e l ++v+++G g+W+ I r  g      + Rt  ++k++w+  
  EuGene.1200010214 390 RTRWSKEEEEYLRKGVEKFGLGSWAMILRDPGfrkhfaEQRTSVDLKDKWRVM 442
                        78************************************99**********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.472385447IPR017930Myb domain
SMARTSM007171.4E-7389445IPR001005SANT/Myb domain
PfamPF002493.6E-7390441IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-12390444IPR009057Homeodomain-like
CDDcd116607.46E-18392443No hitNo description
SuperFamilySSF466894.45E-14392466IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MARTSDTKNL SLDSSLMPRG KRARGTNARD DDADERLCWA LERVVADPTI PDDVKGRVRA  60
HCVKTMEAGR VEAYARGSSC ARTGMCVLAL STSLREMDET EVAAAERRDD ARKAGMEVCV  120
NALESYDPAP VEVKRAEMAA RMEWAFGTIR GGRESPEGKK SGKASETPRW KAMANFWSRW  180
RSVESRAANG ALDAIEDDDD VKKTYEFVRK AAVNGGELPS NWEKMVTSRE DVVERLETLC  240
DDLKTKVGQS FLSRVDAAID TEAPGVVINR GLIVQSTSTM SADAYGNLLH SGRRAPPSPS  300
AEAGKATASS PPKRVHIGVK RKKSARTVEW ESQNDDRAEP EEQSTSFPPR KASSEDVVEP  360
LAELSWGEVG ERTPKHNVVS SPAPGIVRQR TRWSKEEEEY LRKGVEKFGL GSWAMILRDP  420
GFRKHFAEQR TSVDLKDKWR VMMQADARKR ADKDVQTEVD ALAEAIMQIR DSSPKQTRTR  480
R*
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1346933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.29e-11MYB_related family protein