PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EuGene.0800010212

Organism

Ostreococcus sp. RCC809

Taxonomic ID

385169

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus

Family

WRKY

Protein Properties

Length: 347aa MW: 38668.6 Da PI: 10.4457

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EuGene.0800010212	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	48.7	1.5e-15	115	171	5	59
S-EEEEEEE--TT-...SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 5 ynWrKYGqKevkgs...efprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +WrKYG+K + + + rsYYrC+ +gCp++k+v + + +e+ Y +H+++ EuGene.0800010212 115 ISWRKYGRKYIMKEtltPIERSYYRCSVPGCPARKHVCVRS-GSDKLEVSYMHDHTCN 171 58*****99765222567*************8888.8999********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	8.9E-16	112	172	IPR003657	WRKY domain
SuperFamily	SSF118290	3.66E-14	112	172	IPR003657	WRKY domain
PROSITE profile	PS50811	12.243	112	151	IPR003657	WRKY domain
SMART	SM00774	1.8E-8	112	172	IPR003657	WRKY domain
Pfam	PF03106	2.7E-14	115	170	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
MPAVDDDVSD DVERVARSRG RPEGHAALIV RAVSRFLRST DRERTSETGD GTANEKTGEQ 60 GEGSRGDAGS AGVGSETEHG EEATAETRRP RRETETADVA AKGKSRTMIE GEEDISWRKY 120 GRKYIMKETL TPIERSYYRC SVPGCPARKH VCVRSGSDKL EVSYMHDHTC NQLEMLRTDT 180 VKRPPPTRME RIGPPKKRPL QSTCTNDSAN NDQGINARRI PRWTMKRKRT KTDAKKVAST 240 QKVTGAKERR NVGAKKAETN IPQNISLFAR VKSKDGETAL KPVRLIMPSK GQNDALKSQI 300 ALRDAALKVE RSKVIALEAT LELLRSQIEC RNVRERFNGN SNRNCH*

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

MPAVDDDVSD DVERVARSRG RPEGHAALIV RAVSRFLRST DRERTSETGD GTANEKTGEQ  60
GEGSRGDAGS AGVGSETEHG EEATAETRRP RRETETADVA AKGKSRTMIE GEEDISWRKY  120
GRKYIMKETL TPIERSYYRC SVPGCPARKH VCVRSGSDKL EVSYMHDHTC NQLEMLRTDT  180
VKRPPPTRME RIGPPKKRPL QSTCTNDSAN NDQGINARRI PRWTMKRKRT KTDAKKVAST  240
QKVTGAKERR NVGAKKAETN IPQNISLFAR VKSKDGETAL KPVRLIMPSK GQNDALKSQI  300
ALRDAALKVE RSKVIALEAT LELLRSQIEC RNVRERFNGN SNRNCH*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP450	15	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G04880.2	1e-09	zinc-dependent activator protein-1