PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EuGene.0700010343
Organism
Ostreococcus sp. RCC809
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family C3H
Protein Properties Length: 526aa    MW: 58408.6 Da    PI: 7.0641
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EuGene.0700010343genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH171.1e-053862226
                       -S---SGGGGTS.--TTTTT-SS-SS CS
            zf-CCCH  2 ktelCrffartG.tCkyGdrCkFaHg 26
                       ++elC++++  G  C + + C++aH+
  EuGene.0700010343 38 GRELCKNYMTAGkGCER-EDCRRAHV 62
                       79***************.*******7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501037.8733763IPR000571Zinc finger, CCCH-type
SMARTSM003560.553763IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.546492IPR000571Zinc finger, CCCH-type
SMARTSM003560.666591IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.40.50.1502.0E-14336441IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF017284.1E-12336459IPR002877Ribosomal RNA methyltransferase FtsJ domain
SuperFamilySSF533351.19E-9336447IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0032259Biological Processmethylation
GO:0008168Molecular Functionmethyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MPPRADAARD VNVDDRSLVA VGSIRPPPKP FPPRHVDGRE LCKNYMTAGK GCEREDCRRA  60
HVDRAERPSC HQFERYGLCE RGEGCWMRHD ARKLEDFDVV LMCDHELARR HVERAREIFG  120
SDAVVGASRT RLTRKTTDCL ICVKSMLGAA GVLREFYAEE PHGMAKTKRT FAFPDATRRT  180
SVEDVCSDVG KKTLETWLER TVDSLIEESG ATVESPVYAR LRAAPRWLEK IMCDAMDAVI  240
DRRGPSFAAR PPGGGITTRD CTHCVDAVHM WGRAYLGAWT TRGVYEKPSE DGAPTTVMRE  300
AGAPTVPPAG AATMDDLAML FPLRLQDYRV TVAPTCRAYF KLHEALLYAG VPVEGDWNCV  360
DVGAAPGGWT QVLCERLASD TKKTGGRVWA IDPAEVTLDP MPSCARHLRA LAEDAVEPVR  420
DALAESNDEL RLVVCDANMH PEACARIALD FATKFQSSKE SWLIASMKNF CSKRENWFRA  480
MEECARACRD AGYDNVFVKH LFSNCGEEQT LFARRRATTA KSVVV*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001418956.10.0predicted protein
TrEMBLA4S0E00.0A4S0E0_OSTLU; Uncharacterized protein
STRINGABO972490.0(Ostreococcus 'lucimarinus')