PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EuGene.0500010229 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
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Family | GATA | ||||||||
Protein Properties | Length: 225aa MW: 24032.8 Da PI: 8.363 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 49.2 | 7e-16 | 93 | 127 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+ C++ kTplWR+gp g ktLCnaCG++y+ ++ EuGene.0500010229 93 CACCRAQKTPLWRNGPTGAKTLCNACGVRYKAGRV 127 999****************************8876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 1.8E-9 | 87 | 148 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 13.099 | 87 | 123 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.24E-11 | 88 | 130 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.5E-13 | 89 | 125 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 4.19E-11 | 92 | 129 | No hit | No description |
Pfam | PF00320 | 1.9E-13 | 93 | 127 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MASKPRAYAN EMFDAHAKAN AQFGSAWRQP ATTYAALAAA QTKASAERRR RDPSEESDVT 60 RQDGGGAATT PYARNVIVDD DDEGPPPEAG VTCACCRAQK TPLWRNGPTG AKTLCNACGV 120 RYKAGRVVCD ENGKVVTLAP QGRKRAASAT TGDAPYASLH KRVKTPQSSF GYAHLRDARL 180 IELERVDKTT VSEKSPLARV HSATILTDYD GAVLLMLLHD GDDD* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 46 | 51 | ERRRRD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_001417744.1 | 2e-80 | predicted protein | ||||
TrEMBL | A4RXG3 | 5e-79 | A4RXG3_OSTLU; Uncharacterized protein | ||||
STRING | ABO96037 | 9e-80 | (Ostreococcus 'lucimarinus') |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP6335 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66320.2 | 2e-13 | GATA transcription factor 5 |