PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EuGene.0100010066
Organism
Ostreococcus sp. RCC809
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family MYB_related
Protein Properties Length: 278aa    MW: 31104.1 Da    PI: 10.2941
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EuGene.0100010066genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.91.5e-10220269347
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 
                         W ++E   l+++vk++G+g W++I +        +gRt  ++k++w+++
  EuGene.0100010066 220 TWREQEINALKNGVKKHGKGKWALIHAQYHdvfkiLGRTQVDLKDKWRNL 269
                        6***********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.1E-13212270IPR009057Homeodomain-like
PROSITE profilePS5129410.906213274IPR017930Myb domain
SuperFamilySSF466892.57E-12215270IPR009057Homeodomain-like
SMARTSM007171.5E-7217272IPR001005SANT/Myb domain
PfamPF002494.0E-8220269IPR001005SANT/Myb domain
CDDcd116601.95E-16221271No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MLDELRREKT SLAVLQEDMA ASRARATATE RRESTPSPVR EQSRAKTTTS PKRAWGDVGR  60
AEPRKRRAVA TAAGKPSPAR VAPITTLAKS KSRIEDDENV PPKSPLSPVE KLRSTFGSIG  120
AVVSRAMSWR RRSSVDTPPK RQEEEEEEEE EEEEIMPTQV IDGEEVHIDN VPIAQLHIPT  180
NDDDDIETHG TPGERPARTP PRANIIHPGT VKKLRRPKIT WREQEINALK NGVKKHGKGK  240
WALIHAQYHD VFKILGRTQV DLKDKWRNLE KSGQVGS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP650666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49850.16e-10telomere repeat binding factor 3