PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OPUNC12G15050.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 722aa MW: 80094.6 Da PI: 4.9925 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 362.7 | 5.1e-111 | 342 | 714 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 l++lL++cA+av+++d + a++lL++++++a p+gd++qRla++f+e+L+ar+a+++s + ++l +++ts +++ l+a++l+ + + k+s OPUNC12G15050.1 342 LRTLLIHCAQAVATDDRRSATELLKQIKQHAKPTGDATQRLAHCFAEGLQARIAGTGSLVHQSLMAKRTS---VVDILQAYQLYMAAICFKKVS 432 6789***************************************************999999999999998...********************* PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186 ++ Nq+I++a g++++Hi+D++i++G+QWp++l+ +++R++gpp++RiTg++ p++g +e++eetg+rL+k+A+e++vpf++n+++a ++ OPUNC12G15050.1 433 FIFSNQTIYNASLGKKKIHIVDYGIQYGFQWPCFLRRISQREGGPPEVRITGIDIPQPGfrPTERIEETGRRLSKYAQEFQVPFKYNAIAAAKM 526 **********************************************************9******************************999** PP GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280 e+++ e+L+++p+E+l+Vn+++q ++l+desv ++s+rd vL+ +++++P+v++++ + + +++ F++rf eal +ysalfd l+a+ prese OPUNC12G15050.1 527 ESVRKEDLNIDPDEVLIVNCQYQFKNLMDESVVIDSPRDIVLSNIRKMQPHVFIHAIVNGSFSAPFFVTRFREALFFYSALFDVLDATTPRESE 620 ********************************************************************************************** PP GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +r +E+ ++gr++ nv+aceg++r+er et+++W+ r ++aGFk++pl+ ++++ ++ ++ ++ + + ++ ++++l++gWk+r L+++S W+ OPUNC12G15050.1 621 QRLLIEQNIFGRAALNVIACEGTDRVERPETYKQWQVRNQRAGFKQLPLNPEIVQIVRNKVKDCYHKDFVIDIDHQWLLQGWKGRILYAISTWT 714 *****************************************************************889*************************5 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 63.844 | 316 | 694 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.8E-108 | 342 | 714 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 722 aa Download sequence Send to blast |
MGSSAADSFP AGDPYGIGGG EEEDDPSLFL YLSDLAPVSP SAYLDLPPSP PPPTTTTTMK 60 QAGEEAPEDL VLPFISRMLM EEDIDDKFFY DYPDNPALIQ AQQPFLDILS EPSSNSLSNS 120 DDLRLSPTSS TDTSAAINSY EATAPAAVPQ YESIELDPAA FFAAANSDLM SSAFLKGMEE 180 ANKFLPTENK LVIDLEASSE NNYLRGVEEA KRFLPSDDKL QVGFAAPANA AAAPVVSVKK 240 EAVDVVVTSG GRGRKNPYND EELELEGGRS SKQTAVQGDD VAARAMFDKV MMPSHENCTE 300 MMEKLRIAMK EEAAKNEASA GGKGGNGKVK GGRRGGRDVV DLRTLLIHCA QAVATDDRRS 360 ATELLKQIKQ HAKPTGDATQ RLAHCFAEGL QARIAGTGSL VHQSLMAKRT SVVDILQAYQ 420 LYMAAICFKK VSFIFSNQTI YNASLGKKKI HIVDYGIQYG FQWPCFLRRI SQREGGPPEV 480 RITGIDIPQP GFRPTERIEE TGRRLSKYAQ EFQVPFKYNA IAAAKMESVR KEDLNIDPDE 540 VLIVNCQYQF KNLMDESVVI DSPRDIVLSN IRKMQPHVFI HAIVNGSFSA PFFVTRFREA 600 LFFYSALFDV LDATTPRESE QRLLIEQNIF GRAALNVIAC EGTDRVERPE TYKQWQVRNQ 660 RAGFKQLPLN PEIVQIVRNK VKDCYHKDFV IDIDHQWLLQ GWKGRILYAI STWTPNDAIS 720 YF |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 2e-43 | 346 | 713 | 8 | 374 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK111522 | 0.0 | AK111522.1 Oryza sativa Japonica Group cDNA clone:J013002M11, full insert sequence. | |||
GenBank | AK121943 | 0.0 | AK121943.1 Oryza sativa Japonica Group cDNA clone:J033107F03, full insert sequence. | |||
GenBank | AL772425 | 0.0 | AL772425.7 Oryza sativa chromosome 12, . BAC OJ1396_C02 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. | |||
GenBank | AL844878 | 0.0 | AL844878.4 Oryza sativa chromosome 12, . BAC OSJNBb0036A19 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. | |||
GenBank | AP014968 | 0.0 | AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015620149.1 | 0.0 | scarecrow-like protein 34 | ||||
TrEMBL | A0A0E0MNV8 | 0.0 | A0A0E0MNV8_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC12G15050.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP231 | 31 | 297 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G37650.1 | 1e-163 | GRAS family protein |