PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC12G10620.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 851aa    MW: 93597.9 Da    PI: 6.5821
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC12G10620.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.46.6e-24149250199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f+k+lt sd++++g +++ +++a+e+       +  ++ +++l+ +d++g +W++++i+r++++r++l++GW+ Fv+a++L +gD ++F   + 
  OPUNC12G10620.1 149 FCKTLTASDTSTHGGFSVLRRHADEClppldmsQ--HPPTQELVAKDLHGVEWRFRHIFRGQPRRHLLQSGWSVFVSAKRLVAGDAFIFL--RG 238
                      99*****************************544..455569************************************************..44 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      +++el+v+v+r+
  OPUNC12G10620.1 239 ENGELRVGVRRA 250
                      9999*****996 PP
2Auxin_resp111.86.5e-37275357183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      a+ha++t+++F+v+Y+Pr+s+seFvv+++ +e++lk++ s+GmRfkm fe+e+++e+r++Gt+vg+ d+dp+ W +SkWrsLk
  OPUNC12G10620.1 275 AWHAVNTGTMFTVYYKPRTSPSEFVVPRDLYEESLKRNHSIGMRFKMTFEGEEAAEQRFTGTIVGIGDSDPSGWADSKWRSLK 357
                      89*******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.85E-41142278IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.7E-42143264IPR015300DNA-binding pseudobarrel domain
CDDcd100177.24E-22147249No hitNo description
PROSITE profilePS5086311.899149251IPR003340B3 DNA binding domain
SMARTSM010199.8E-24149251IPR003340B3 DNA binding domain
PfamPF023628.4E-22149250IPR003340B3 DNA binding domain
PfamPF065074.2E-34275357IPR010525Auxin response factor
PfamPF023091.2E-11702799IPR033389AUX/IAA domain
PROSITE profilePS5174523.837714798IPR000270PB1 domain
SuperFamilySSF542775.89E-12716790No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 851 aa     Download sequence    Send to blast
MAAAATAAAA AAPAPVEGLA GGGGGGVDGL FVELWRACAG PLVTVPAVGE RVFYLPQGHI  60
EQVEASTNQV AEQQGAPLYN LPWKIPCKVM NVELKAEPDT DEVYAQLTLL PEKQQDGNGS  120
GNGDVSKDKV EEQEVVPPAA TERHRVHSFC KTLTASDTST HGGFSVLRRH ADECLPPLDM  180
SQHPPTQELV AKDLHGVEWR FRHIFRGQPR RHLLQSGWSV FVSAKRLVAG DAFIFLRGEN  240
GELRVGVRRA MRQQANIPSS VISSHSMHLG VLATAWHAVN TGTMFTVYYK PRTSPSEFVV  300
PRDLYEESLK RNHSIGMRFK MTFEGEEAAE QRFTGTIVGI GDSDPSGWAD SKWRSLKVRW  360
DEAASVPRPD RVSPWQIEPA NSPSPVNPLP APRTKRARPN VVASSPDLST VNKEVASKVM  420
PNSQQNGLPR AFHSQESMNL RSRFGDSSEL NTSQKLTLWS SGSNQEKNNA SVQRELGSQS  480
WMQMRKPDGS SEILSGFQPL KDTRNPLSSF PSQISGNRSN TWNTINVHYP DQNANHNMFP  540
GTWSLMPPNT GFGVNQQNYL MTPDIILPQR SLNAKFGGNG AFTSLRAHGI DQRSSGWLGH  600
IEPSSHIDDA SSSLIKPQPL VIDHNVQKAK GSSCMLFGIS LDSPAKPEQL ISPPSVAFDG  660
KLQQDALEED ECSDPSKTVK PLDGAQHDSA TEKHQSCPEG ARNIQSKQQN GSSRSCKKVH  720
KQGIALGRSI DLTKFTCYDE LIAELDQMFD FNGELNSSSK NWMVVYTDNE GDMMLVGDDP  780
WNEFCNMVHK IFIYTREEVQ KMNPGALNSR SEDSRSTSVE RGLVGEGLQG LLWFARTEDD  840
ISMVGRNLFV V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-169203847359Auxin response factor 1
4ldw_A1e-169203847359Auxin response factor 1
4ldw_B1e-169203847359Auxin response factor 1
4ldx_A1e-169203847359Auxin response factor 1
4ldx_B1e-169203847359Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0652540.0AK065254.1 Oryza sativa Japonica Group cDNA clone:J013002J11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620411.10.0auxin response factor 24 isoform X1
RefseqXP_015620412.10.0auxin response factor 24 isoform X1
SwissprotQ2QQX60.0ARFX_ORYSJ; Auxin response factor 24
TrEMBLA0A0E0MMC70.0A0A0E0MMC7_ORYPU; Auxin response factor
STRINGOPUNC12G10620.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP117836111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0auxin response factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Li G, et al.
    Rice actin-binding protein RMD is a key link in the auxin-actin regulatory loop that controls cell growth.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(28): p. 10377-82
    [PMID:24982173]