PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC12G08870.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 422aa    MW: 45673.7 Da    PI: 4.8347
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC12G08870.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM70.44.9e-2291332128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykv.ePwdLp.k...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                        GfrF+P++ee+v++yL + ++g++  ++e +i+++d+y + eP+dL  k    +++++ + +fF+  ++++    + +r++  g+W ++ + 
  OPUNC12G08870.1   9 ELGFRFNPSQEEVVTYYLPRLIAGHSpKDTEGCIHRADVYGAaEPRDLAgKyapVARSTNGDRFFFTGCKRTK---GKFSRSAGGGTWVSQSS- 98 
                      57**********************994445556******9765*****8435543333444789999998854...5899999******8865. PP

              NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      k++++++g ++g  k + f     ++g++tdW+m+ey+l
  OPUNC12G08870.1  99 KDIKNREGIKIGEVKNFRFK----KDGRNTDWLMEEYHL 133
                      99***9*************7....78899********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.58E-237152IPR003441NAC domain
PROSITE profilePS5100524.2788152IPR003441NAC domain
PfamPF023656.6E-1511133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MASLDLLLEL GFRFNPSQEE VVTYYLPRLI AGHSPKDTEG CIHRADVYGA AEPRDLAGKY  60
APVARSTNGD RFFFTGCKRT KGKFSRSAGG GTWVSQSSKD IKNREGIKIG EVKNFRFKKD  120
GRNTDWLMEE YHLCRQEAGD VVEPVVCRIY VSPRAAPDSA ARQESAALPP PQDLAPPPQE  180
LAQPPDPAAQ AATQAFVPPR QVPVITQQAP PLKRPAAPVA EPPCAKKMKG AVSAIPVAPQ  240
SCVTPSTAPP PRHPPIQTYP AALVTQPPSV PATPEQGLAY DPVLDPANIG IDMDELMRYL  300
DSSPLDGGVL SSQLFVLPTN DDEDDEHAKV LEDVLQGGEK DGNDTPPRCV PPPPPAPPSQ  360
CVMAPPPPPH PPILTCPKDP FEPNDDEVDD ENNFASMLRH HVFPPSIEQE DVTRCKGPTV  420
CF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619212.11e-175vegetative cell wall protein gp1
TrEMBLA0A0E0MLS60.0A0A0E0MLS6_ORYPU; Uncharacterized protein
STRINGOPUNC12G08870.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18322799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10490.11e-13NAC domain containing protein 52