PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC12G07650.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

FAR1

Protein Properties

Length: 374aa MW: 43620 Da PI: 8.0708

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC12G07650.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	32.9	2.1e-10	126	170	45	91
FAR1 45 kkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 ++ +++++++++ +t+C+ ++++k++ kw vt ++l+HnH+l+p OPUNC12G07650.1 126 DN-ASRQKKSNTIIKTKCEVRMQIKMN-GTKWLVTLVDLKHNHPLVP 170 33.4788999**************9.9*************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.9E-8	125	170	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence Send to blast
MCGDDGMNFM QGIVQDGSVG LNNIDERDEN EVLDQVGLGA EQDILEEVDQ NLDETNMIVE 60 PTTQEEKEMD KMFQNDNYPT VSEIADATAP EKGMEFDSRN LIPGMLLITF LQTMPEKWQR 120 GPGDRDNASR QKKSNTIIKT KCEVRMQIKM NGTKWLVTLV DLKHNHPLVP PKWLVKFMHC 180 HKNMTEQERE FIQILQKNKV PPRKIMTIFR SLRGSFRNIP FDAKDLSNIR TKERKKHRNK 240 DIEELLGLFK KVQNKTLGLP YRLQLDDDGT VRSVFWTDLV GRMNYKMFGD YVSFDTTFST 300 NMYNQMLMDM INKQKGINDT NENIDNDKGT KSSVRYAIMM SKMSQDLLNR LKPINERRKR 360 KLSNDLQHLD LRLN

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence Send to blast

MCGDDGMNFM QGIVQDGSVG LNNIDERDEN EVLDQVGLGA EQDILEEVDQ NLDETNMIVE  60
PTTQEEKEMD KMFQNDNYPT VSEIADATAP EKGMEFDSRN LIPGMLLITF LQTMPEKWQR  120
GPGDRDNASR QKKSNTIIKT KCEVRMQIKM NGTKWLVTLV DLKHNHPLVP PKWLVKFMHC  180
HKNMTEQERE FIQILQKNKV PPRKIMTIFR SLRGSFRNIP FDAKDLSNIR TKERKKHRNK  240
DIEELLGLFK KVQNKTLGLP YRLQLDDDGT VRSVFWTDLV GRMNYKMFGD YVSFDTTFST  300
NMYNQMLMDM INKQKGINDT NENIDNDKGT KSSVRYAIMM SKMSQDLLNR LKPINERRKR  360
KLSNDLQHLD LRLN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	355	361	ERRKRKL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003566270.1	5e-81	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A0E0MLA8	0.0	A0A0E0MLA8_ORYPU; Uncharacterized protein
STRING	OPUNC12G07650.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-22	FAR1-related sequence 5