PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC12G06560.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB | ||||||||
Protein Properties | Length: 993aa MW: 109157 Da PI: 4.8851 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.9 | 1.1e-08 | 50 | 76 | 1 | 27 |
TSSS-HHHHHHHHHHHHHTTTT-HHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktI 27 +g+WT+eEd +l +av+ + g++Wk+I OPUNC12G06560.1 50 KGNWTPEEDAILSRAVQTYKGKNWKKI 76 79************************9 PP | |||||||
2 | Myb_DNA-binding | 59.9 | 5.4e-19 | 102 | 148 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd+++v+ v++lG++ W+tIa+ ++ gR +kqc++rw+++l OPUNC12G06560.1 102 KGPWSKEEDDIIVQMVNKLGPKKWSTIAQALP-GRIGKQCRERWHNHL 148 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 47.2 | 5.1e-15 | 154 | 196 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eE+ l++a++++G++ W+ + ++ gRt++ +k++w+ OPUNC12G06560.1 154 KEAWTQEEEITLIHAHRMYGNK-WAELTKFLP-GRTDNAIKNHWN 196 579*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.737 | 45 | 96 | IPR017877 | Myb-like domain |
SMART | SM00717 | 1.7 | 49 | 98 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-6 | 50 | 76 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.1E-8 | 50 | 100 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.1E-15 | 52 | 113 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 31.404 | 97 | 152 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.55E-30 | 99 | 195 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.2E-17 | 101 | 150 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.3E-17 | 102 | 148 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.11E-15 | 104 | 148 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.1E-26 | 114 | 156 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.654 | 153 | 203 | IPR017930 | Myb domain |
SMART | SM00717 | 4.4E-14 | 153 | 201 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-13 | 154 | 197 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.09E-11 | 156 | 196 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.1E-21 | 157 | 203 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 993 aa Download sequence Send to blast |
MASDNGKAPE KGGEASGPPS APQEGEISNE PQRRRPLSGR TTGPTRRSTK GNWTPEEDAI 60 LSRAVQTYKG KNWKKIGCIK NNIYISQYYP RWQKVLNPEL VKGPWSKEED DIIVQMVNKL 120 GPKKWSTIAQ ALPGRIGKQC RERWHNHLNP GINKEAWTQE EEITLIHAHR MYGNKWAELT 180 KFLPGRTDNA IKNHWNSSVK KKVDSYMSSG LLTQVSCLPL NEYSVHCNSS PAVTQQNSED 240 SGSYAVREVE NSSGCSQSSL AKVSCSQVHN ANVALGCDLQ VNANVDKNET HDSQSSVGHE 300 ACYTSVEAVS TAMPEVHYHV SSSNFDLDQH LQEEFAQGLN LHMSIDEVPS NSSFADNPTI 360 CSIENHERSL EPYDVAMEMP LSMLQSDPGA EQKLHFMSEA DFNSPNCLKS ELWQDISLQS 420 LLSGPDAVET DSFSRSNHQS DVYSSQADTE FLAPPYLLQT SNSSSVMEAT YGQSPQMSVP 480 PSLICSNVMT DVPSDNRSEP KEMPVSQAEM VTQSSSSSGD AEMSANPCSS NDSDVPSMME 540 RIPECTDQQV TNAEEPEASI EKEPSVTPVV TATDEKQDEG ALFYEPPRFP SMDVPFVSCD 600 LVTSGDLQEY SPLGIRQLMR STMNVCTPMR LWGSPTHDES PDILLKSAAK SFICTPSILK 660 KRHRDLVSPI PDKRIEKKSG TEKDCGVSDT SSIGIQTCFI NATKDDAVIT KSVLRSASFK 720 PLEKKLEFSD ENKENLDNTT EQAKDGQSAG NDKHIDEQAR GEQRTATNIT ITYDDLPCNL 780 QPAGILIEHN GDDLVSPDHG KNTMKQKQNT NMESLSVCKE GVSGKLKPTE LIVEKSSACI 840 NVDYEYVNIL ADTPGIKRGL ESPSAWKSPW FVDMQFQGSY FVSPADRTYD ALGLVKQINV 900 QTAAALAEAR EVLASGGQSE NINSDKENLE NPDAKKEPGA TTKLQAKIKT EGKILDFNEC 960 ATPIRSSDRK AGSSLGRSLS SPIPSSHLLK SFR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 6e-57 | 50 | 203 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 6e-57 | 50 | 203 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ430051 | 0.0 | AJ430051.1 Oryza sativa mRNA for transcription factor myb (myb3R1 gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025878027.1 | 0.0 | LOW QUALITY PROTEIN: transcription factor MYB3R-4-like | ||||
TrEMBL | A0A0E0MKY8 | 0.0 | A0A0E0MKY8_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC12G06560.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2495 | 38 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32730.1 | 1e-82 | Homeodomain-like protein |