PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC12G06140.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

FAR1

Protein Properties

Length: 281aa MW: 31702.7 Da PI: 5.0136

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC12G06140.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	79	8.6e-25	94	184	2	89
FAR1 2 fYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 fYneYA+ +GF r+ +s++s +++ +++++fvCs+eg +++++ + + +++r+ra+ r gC+a+++v + +++w+v+kle+ HnH+l OPUNC12G06140.1 94 FYNEYARWLGFPFRVGRSRRSkGMEEVVIMKRFVCSREGAHKKKQAStsgEATSKRERASMREGCNAMMEVVRG-KDHWVVSKLEKAHNHSL 184 9*****************944567789*********99999888888999***********999.9************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.1E-22	94	184	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MEDDERGDGD ELIADYVDCL MSLDTNSRSC QNDTLILEGA PDDVEDDDAA AAAAAEQDVM 60 RDFAPANADA DAEHDPKEPM LGMTFESDEA AKMFYNEYAR WLGFPFRVGR SRRSKGMEEV 120 VIMKRFVCSR EGAHKKKQAS TSGEATSKRE RASMREGCNA MMEVVRGKDH WVVSKLEKAH 180 NHSLGIGTRY GYLSARESCV IESETISTFE TSWMSILEKY DLKKNAWLQA IYNIRQKWEP 240 NLLGLLLGSS NVYIFVFSGR CNVIYHHCMA SCLTCNFHVA R

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK065655	0.0	AK065655.1 Oryza sativa Japonica Group cDNA clone:J013037J06, full insert sequence.
GenBank	AK102652	0.0	AK102652.1 Oryza sativa Japonica Group cDNA clone:J033101E02, full insert sequence.
GenBank	AK121853	0.0	AK121853.1 Oryza sativa Japonica Group cDNA clone:J033101P07, full insert sequence.
GenBank	AL731740	0.0	AL731740.4 Oryza sativa chromosome 12, . BAC OSJNBb0001P19 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBank	AP014968	0.0	AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015620344.1	1e-112	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A0E0MKT6	0.0	A0A0E0MKT6_ORYPU; Uncharacterized protein
STRING	OPUNC12G06140.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	9e-20	FAR1 family protein