PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OPUNC12G05650.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 221aa MW: 25319.3 Da PI: 9.2113 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 80.9 | 8.2e-26 | 10 | 58 | 2 | 50 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 rien rqvtf+kRr g+lKKA ELSvLCda+v viifss+gkl+e + OPUNC12G05650.1 10 RIENPVHRQVTFCKRRGGLLKKARELSVLCDADVGVIIFSSQGKLHELA 58 8*********************************************965 PP | |||||||
2 | K-box | 47 | 1.1e-16 | 103 | 192 | 11 | 100 |
K-box 11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 + + + +q + L++ei Lqr +R G + ++++l L+ Le+ Le + +iR++K++++ ++i+ l++ke l+ +n++L++k++e OPUNC12G05650.1 103 ALQRQVAEQGILLLREEIGLLQRGLRSTYGGGAGDMTLDKLHALEKGLELWIYQIRTTKMHMMQQEIQFLRNKEGILKAANEMLQEKVKE 192 4556777899999**************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 1.57E-25 | 1 | 64 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 5.4E-36 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 29.464 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.7E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 8.11E-35 | 3 | 93 | No hit | No description |
Pfam | PF00319 | 7.5E-24 | 10 | 56 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.7E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.7E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 7.8E-18 | 105 | 190 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 11.031 | 106 | 196 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 221 aa Download sequence Send to blast |
MVRGKVQMRR IENPVHRQVT FCKRRGGLLK KARELSVLCD ADVGVIIFSS QGKLHELATN 60 GITVICEYNS EILSFCSRNA RDMHNLVERY QSNVTGGQME REALQRQVAE QGILLLREEI 120 GLLQRGLRST YGGGAGDMTL DKLHALEKGL ELWIYQIRTT KMHMMQQEIQ FLRNKEGILK 180 AANEMLQEKV KEQQKLYTSL LDLHSQQPTQ SMTYGNCFFS I |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AY177700 | 1e-171 | AY177700.1 Oryza sativa (japonica cultivar-group) transcription factor MADS33 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025878023.1 | 1e-145 | MADS-box transcription factor 33 isoform X2 | ||||
Swissprot | Q2QW55 | 1e-130 | MAD33_ORYSJ; MADS-box transcription factor 33 | ||||
TrEMBL | A0A0E0MKM7 | 1e-162 | A0A0E0MKM7_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC12G05650.1 | 1e-163 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1491 | 36 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G71692.1 | 2e-48 | AGAMOUS-like 12 |