PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC12G04640.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 557aa    MW: 59186.8 Da    PI: 4.5583
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC12G04640.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM47.17.8e-15212216127
              NAM  16 veyLkkkvegkkleleev..ikevdiykvePwdLpk......kvkaeekewyfFskrdkkya......tgkrknr.atksgyWkatgkdkevls 94 
                      ++yL++ ++g+++++ e+  ++++d+y   P  L++      +  +   +w+f s+++++++      ++kr++r +++ g+Wk     k+vl 
  OPUNC12G04640.1   2 HNYLNRWIAGEPIPEMEAgfVAKADVYGEGPDALRRrhwpgyC-CNYAYKWFFLSHHKRQSSrdsrrtSNKRAERlVAAGGRWKVEQG-KKVLG 93 
                      68**********777664459999**********844677642.234569999999888887444443344667766889****6544.68888 PP

              NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyr 127
                       +g   g +++L fy+    + +kt+W+m+ey+
  OPUNC12G04640.1  94 -GGGGGGERDSLGFYS---TEKSKTSWMMEEYT 122
                      .88899*********4...34468********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100520.4251147IPR003441NAC domain
SuperFamilySSF1019413.79E-133147IPR003441NAC domain
PfamPF023653.0E-83122IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MHNYLNRWIA GEPIPEMEAG FVAKADVYGE GPDALRRRHW PGYCCNYAYK WFFLSHHKRQ  60
SSRDSRRTSN KRAERLVAAG GRWKVEQGKK VLGGGGGGGE RDSLGFYSTE KSKTSWMMEE  120
YTSSVAGAAP RGEEDRMVPV LCKMYLSPRA TVGEKRALFG EDGVEVGPDG RKRNARVTVV  180
ATLFDDVAAL LGQPVAAAPL APPQPVPGDV GHHQHGHFAA ALPAPGDLLG HGHFDDVAGC  240
VGQVAVAALP ASGDLGHGYF DDAAALLGQV AMAPAPAPVH HQQGYVVAEA LPESGYLGHY  300
HHDGHFWQAA APEQDYLGYQ SHDAHVAEVT PEQGYLGHHQ GHLATEAPDQ DYHDDARVAV  360
AAPEQGDLGH DQGHLAAALT PEECCEIVSA YEFYPEMVQM LSIGFAVPDE QLLPQLLEPT  420
GGGYDMASSA TAAAVGKANA YAAAAAAPTP QIRPNATEAM AAMATAETMP PPLDAVAAEL  480
SAPPRGLPRE LAFNALPSVQ QEPPCDDDDD DDDDNFGELV AEAMPPLILE NIADVDAGSD  540
ELLPDLAGYH AGVGFWT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL7323760.0AL732376.2 Oryza sativa chromosome 12, . BAC OSJNBa0086B10 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0MKA10.0A0A0E0MKA1_ORYPU; Uncharacterized protein
STRINGOPUNC12G04640.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135701724