PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC12G04190.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 261aa MW: 27508.7 Da PI: 8.9356 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.1 | 6.1e-20 | 169 | 218 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp + +r++lg+f+tae+Aa+a++ a+++++g OPUNC12G04190.1 169 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEDAARAYDGAALRFRG 218 8********.**********7.....337************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.64E-30 | 168 | 228 | No hit | No description |
SuperFamily | SSF54171 | 1.18E-22 | 169 | 227 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.5E-13 | 169 | 218 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-36 | 169 | 232 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.462 | 169 | 226 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.2E-33 | 169 | 227 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-12 | 170 | 181 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-12 | 192 | 208 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MCCISDEVAN RGEQQRQRRR PLDAGGDEGA VAASTSMSPA AASLLAAPML SRRRQAEEMM 60 AMVSALARVV ASGGGAVSSS LPAKRPAERE PEDGAAVENA WWSYCSELAA AGTPSPAAAP 120 FPAGYVPSPG QHSPASAFTA AAADEEQLPS PSSADSGGGG ESAGTARKRY RGVRQRPWGK 180 WAAEIRDPHK AARVWLGTFD TAEDAARAYD GAALRFRGSR AKLNFPEHAT LPPPPTPAAH 240 RWGYFCQVRS TVNLKLTWHA T |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-24 | 168 | 226 | 4 | 63 | ATERF1 |
3gcc_A | 1e-24 | 168 | 226 | 4 | 63 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 165 | 171 | ARKRYRG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK107125 | 1e-170 | AK107125.1 Oryza sativa Japonica Group cDNA clone:002-124-B10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015619856.1 | 1e-104 | ethylene-responsive transcription factor ERF110 | ||||
TrEMBL | A0A0E0MK41 | 0.0 | A0A0E0MK41_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC12G04190.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9894 | 25 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G43160.1 | 1e-25 | related to AP2 6 |