PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC12G03300.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | B3 | ||||||||
Protein Properties | Length: 265aa MW: 29689.9 Da PI: 7.495 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 95.9 | 2.7e-30 | 36 | 140 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.. 87 f+k ltpsdv+k++rlv+pk++ae++ g + e++ l++edesg+ W+++++y+ +s++yvltkGW+++vk+++L++gD+v F++ + OPUNC12G03300.1 36 FEKPLTPSDVGKLNRLVIPKQHAERYfplsgGDSGEKGLLLSFEDESGKPWRFRYSYWTSSQSYVLTKGWSRYVKEKHLDAGDVVHFERLRGlg 129 99****************************9555568889************************************************664433 PP SEE..EEEEE- CS B3 88 sefelvvkvfr 98 + +l+++ +r OPUNC12G03300.1 130 AGDRLFIGCRR 140 44455555555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.0E-40 | 31 | 146 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.44E-30 | 33 | 127 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.94E-28 | 35 | 127 | No hit | No description |
Pfam | PF02362 | 1.8E-27 | 36 | 140 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.9E-22 | 36 | 141 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.592 | 36 | 141 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010073 | Biological Process | meristem maintenance | ||||
GO:0010358 | Biological Process | leaf shaping | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 265 aa Download sequence Send to blast |
MAMHPLAQGH PQAWPWGVAM YTNLHYHHHY EREHLFEKPL TPSDVGKLNR LVIPKQHAER 60 YFPLSGGDSG EKGLLLSFED ESGKPWRFRY SYWTSSQSYV LTKGWSRYVK EKHLDAGDVV 120 HFERLRGLGA GDRLFIGCRR RGESAPAVRV TPPAALNGGE QQPWSPMCYS TSGSSYDPTS 180 PANSYAYHRS VDQDHSDILH AGESQRDADA KSSSAASAPP PSRRLRLFGV NLDCGPEPEA 240 DQATAMYGYM HHQSPYTAVP NYWGS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 2e-50 | 31 | 141 | 3 | 113 | B3 domain-containing transcription factor NGA1 |
5os9_B | 2e-50 | 31 | 141 | 3 | 113 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL928758 | 0.0 | AL928758.3 Oryza sativa chromosome 12, . BAC OSJNBb0075N21 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. | |||
GenBank | AP014968 | 0.0 | AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012620 | 0.0 | CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015618154.1 | 1e-168 | B3 domain-containing protein Os11g0156000-like | ||||
Swissprot | Q53QI0 | 1e-132 | Y1160_ORYSJ; B3 domain-containing protein Os11g0156000 | ||||
TrEMBL | A0A0E0MJU4 | 0.0 | A0A0E0MJU4_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC12G03300.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2446 | 38 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06250.2 | 2e-55 | B3 family protein |
Publications ? help Back to Top | |||
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