PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC12G02310.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 485aa    MW: 53225.4 Da    PI: 7.3931
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC12G02310.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS362.94.7e-111384742374
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      + lL++cA  vs+g++ +a++ L+++ +las d+  ++qRlaa+f+ ALa++l++ v++l++al +s++s  +      a++  ++v P+lk++
  OPUNC12G02310.1  38 IGLLYQCAAEVSAGSFDRANHWLEHITQLASLDApHALQRLAAVFADALARKLLNLVPGLSRALLSSANSA-DAHLIPVARRHMFDVLPFLKLA 130
                      679*******************************9*****************************8888773.4445556778899********* PP

             GRAS  95 hltaNqaIleavegeervHiiDfd..isqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
                      +lt+N+aIlea+ege+ vHi+Df+  + +++QW+aL++a+  R+egpp+lRiT+v++    ske l +++  L+k Ae++++ f+fn+ v+ +l
  OPUNC12G02310.1 131 YLTTNHAILEAMEGERFVHIVDFSgpAANPVQWIALFHAFRGRREGPPHLRITAVHD----SKEFLANMAAVLSKEAEAFDIAFQFNA-VEAKL 219
                      ***********************966899****************************....9**************************.79999 PP

             GRAS 187 edleleeL....rvkpgEalaVnlvlqlhrll.............................................................. 214
                      +++++++L     v++gEalaV++vlqlhrll                                                              
  OPUNC12G02310.1 220 DEMDFDTLrhdlGVRSGEALAVSVVLQLHRLLavddgrrhsaagcltpvqiiarssprsfgellerelntrlqlspdasvvssllphspaaata 313
                      9999988833336677***************************************************************************997 PP

             GRAS 215 desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrer 308
                      ++++s+++   ++L++v+slsPk++v++eqea+hn++ F erf eal+yy++lfd+l+ + ++++ er+ vEr+llg+ei+ vvacegaer+er
  OPUNC12G02310.1 314 AHPTSTPK-LGSFLSAVRSLSPKIMVMTEQEANHNGGAFQERFDEALNYYASLFDCLQRS-SAAAAERARVERVLLGEEIRGVVACEGAERVER 405
                      66667766.999*********************************************998.68899**************************** PP

             GRAS 309 hetlekWrerleeaGFkpvplsekaakqaklllrkvksdg.yrveee..sgslvlgWkdrpLvsvSaWr 374
                      he++++W +r+e+aG++ v ls++ a++a+ ll+ +++ g y+v ++   + ++++W++rpL++vSaWr
  OPUNC12G02310.1 406 HERARQWAARMEAAGMERVGLSYSGAMEARKLLQSCGWAGpYEVRHDagGHGFFFCWHKRPLYAVSAWR 474
                      *************************************8888****884345678**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098550.88711451IPR005202Transcription factor GRAS
PfamPF035141.6E-10838474IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MSSATSSPTS SVYSMSPSPS NGSWVQELSH DQQSVRLIGL LYQCAAEVSA GSFDRANHWL  60
EHITQLASLD APHALQRLAA VFADALARKL LNLVPGLSRA LLSSANSADA HLIPVARRHM  120
FDVLPFLKLA YLTTNHAILE AMEGERFVHI VDFSGPAANP VQWIALFHAF RGRREGPPHL  180
RITAVHDSKE FLANMAAVLS KEAEAFDIAF QFNAVEAKLD EMDFDTLRHD LGVRSGEALA  240
VSVVLQLHRL LAVDDGRRHS AAGCLTPVQI IARSSPRSFG ELLERELNTR LQLSPDASVV  300
SSLLPHSPAA ATAAHPTSTP KLGSFLSAVR SLSPKIMVMT EQEANHNGGA FQERFDEALN  360
YYASLFDCLQ RSSAAAAERA RVERVLLGEE IRGVVACEGA ERVERHERAR QWAARMEAAG  420
MERVGLSYSG AMEARKLLQS CGWAGPYEVR HDAGGHGFFF CWHKRPLYAV SAWRTAASYR  480
YHTRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-32254737378Protein SCARECROW
5b3h_A5e-32254736377Protein SCARECROW
5b3h_D5e-32254736377Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1235270.0AC123527.3 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0068G15, complete sequence.
GenBankAC1514800.0AC151480.1 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNAa0068G15, complete sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616659.10.0scarecrow-like protein 3
TrEMBLA0A0E0MJG50.0A0A0E0MJG5_ORYPU; Uncharacterized protein
STRINGOPUNC12G02310.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-105scarecrow-like 3