PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC12G00430.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | LBD | ||||||||
Protein Properties | Length: 390aa MW: 43115.5 Da PI: 8.9087 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 135 | 2.9e-42 | 258 | 357 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +Ca+Ck+lrr+C+++Cv+apyfpae++++fa+vh++FGasnv+k+l ++p+ +r da+sslvyeA+ar+rdPvyG+v+ i+ lq+q++ql+ +l OPUNC12G00430.1 258 PCASCKLLRRRCTSECVFAPYFPAEEAQRFAMVHRVFGASNVSKMLLDVPPPQRADAVSSLVYEANARMRDPVYGCVASISFLQHQVSQLQMQL 351 7********************************************************************************************* PP DUF260 95 allkee 100 al+++e OPUNC12G00430.1 352 ALANAE 357 *99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.407 | 257 | 358 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.9E-42 | 258 | 355 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 390 aa Download sequence Send to blast |
MATTAGAGDE HLLSLLASAL SHRRFGEQEL RLLDAALSAG PDVSALLHTR SSARCLLREA 60 AAQAFSVPDL GTRLSIADFF ARAFALAGDV ESCLAMRYEA LLLREAKYPD DLHLQVSNEE 120 WLTFAKDCLD NGFYTIASKA FANALVHIDP SCPRYLDPTN SILKKDKING ISGLQNLAKS 180 LSALRSVQTQ SAEYMKRKAS EVNDKCNLHL QKAKLPGSSM FRLGIKTRNI RKLHCSRQRN 240 LKESRGRKAM AGSGSGTPCA SCKLLRRRCT SECVFAPYFP AEEAQRFAMV HRVFGASNVS 300 KMLLDVPPPQ RADAVSSLVY EANARMRDPV YGCVASISFL QHQVSQLQMQ LALANAETAA 360 LQLQLQQDQD HHHQQCMLQE AFLKKESMWT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-43 | 253 | 357 | 6 | 110 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-43 | 253 | 357 | 6 | 110 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK241761 | 1e-166 | AK241761.1 Oryza sativa Japonica Group cDNA, clone: J065205C18, full insert sequence. | |||
GenBank | AP014967 | 1e-166 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. | |||
GenBank | AP014968 | 1e-166 | AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence. | |||
GenBank | BX000494 | 1e-166 | BX000494.2 Oryza sativa chromosome 12, . BAC OSJNBa0052H10 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. | |||
GenBank | BX000497 | 1e-166 | BX000497.1 Oryza sativa chromosome 11, . BAC OSJNBa0010K05 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015617626.1 | 1e-140 | uncharacterized protein LOC4349559 | ||||
TrEMBL | A0A0E0MIP5 | 0.0 | A0A0E0MIP5_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC12G00430.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6751 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30130.1 | 5e-48 | LBD family protein |