PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC11G15520.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 789aa MW: 89091 Da PI: 5.0894

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC11G15520.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.3	0.00053	98	116	3	21
ETTTTEEESSHHHHHHHHH CS zf-C2H2 3 CpdCgksFsrksnLkrHir 21 Cp C+k+F ++ +L++H OPUNC11G15520.1 98 CPVCDKVFLDSNSLQSHVE 116 *****************75 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04780	1.3E-10	57	127	IPR006865	Domain of unknown function DUF629
PROSITE profile	PS50157	9.265	96	126	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 789 aa Download sequence Send to blast
MAATSQCRVA VARERLRGVR ADVEALTGVS HHGTIPPPSR SRCGALPDTD DEVWSSLMVR 60 VEDLKAHCAK IGSSAGVLAV ADAVEFVKAT NAWVYWLCPV CDKVFLDSNS LQSHVESEYI 120 HQLQQLLPLM QPSTTMRPTS KNSSSTGVQE DGEEITRIGE IVNGSEVPFV GCVAFSILDG 180 PEIPSVDPMS FSSLDEPEVS SVEPVSKVVK SKKGRRRKTK KWDAYFDHCR EIERDCPSWE 240 ELLLPLCREM PELWEYLESC VETEESEYSS HLISLVEDGS VLFLDSQKIA PRNMDGSFNV 300 DALFNWLLSG SSPQEPVPSW TSIRKRCVHD GNEVLKRIGE ILDLLQEQFG LKDHSDETMH 360 GDFFTTKVNS IDVEISHMSS EVSFLRKKLV KVCTFDYRIV ILPLIRDYLW AKLNNDSPGK 420 ELHDTDDIHE EYVVQEKSRG TDSDLDHQSS RTEEFENSSL SFSESSDLST LETESTSFNS 480 GIGTVHQITT DELSLNVTLR ALWHLRRFHV FRQIPHTLHH LSVRDHCVVC LLCEIFYSWD 540 HNEDHTAAIL LGNAGTAFSD ILNDRNFDYK ENKNIAYEII SIIVEILHMS QKHYSFETFE 600 PVEISPSRCF GYCVPHDVLA LHFKQKKCNC VNKPGGENDY IAIFHTVDVG AIQKTEMKSF 660 GDILKAAELD VESCRCGNKP EGSLLFPPYI FTTVFSWPTE KENYVDMSEV LINIAAPLDI 720 IHTVYEVDFK SMYRLITVKI LMPGHWVGRG TLIKVVTGNR CQWPALTKEW IGLGIMARSG 780 LLRVHQDSC

Sequence ? help Back to Top

Protein Sequence Length: 789 aa Download sequence Send to blast

MAATSQCRVA VARERLRGVR ADVEALTGVS HHGTIPPPSR SRCGALPDTD DEVWSSLMVR  60
VEDLKAHCAK IGSSAGVLAV ADAVEFVKAT NAWVYWLCPV CDKVFLDSNS LQSHVESEYI  120
HQLQQLLPLM QPSTTMRPTS KNSSSTGVQE DGEEITRIGE IVNGSEVPFV GCVAFSILDG  180
PEIPSVDPMS FSSLDEPEVS SVEPVSKVVK SKKGRRRKTK KWDAYFDHCR EIERDCPSWE  240
ELLLPLCREM PELWEYLESC VETEESEYSS HLISLVEDGS VLFLDSQKIA PRNMDGSFNV  300
DALFNWLLSG SSPQEPVPSW TSIRKRCVHD GNEVLKRIGE ILDLLQEQFG LKDHSDETMH  360
GDFFTTKVNS IDVEISHMSS EVSFLRKKLV KVCTFDYRIV ILPLIRDYLW AKLNNDSPGK  420
ELHDTDDIHE EYVVQEKSRG TDSDLDHQSS RTEEFENSSL SFSESSDLST LETESTSFNS  480
GIGTVHQITT DELSLNVTLR ALWHLRRFHV FRQIPHTLHH LSVRDHCVVC LLCEIFYSWD  540
HNEDHTAAIL LGNAGTAFSD ILNDRNFDYK ENKNIAYEII SIIVEILHMS QKHYSFETFE  600
PVEISPSRCF GYCVPHDVLA LHFKQKKCNC VNKPGGENDY IAIFHTVDVG AIQKTEMKSF  660
GDILKAAELD VESCRCGNKP EGSLLFPPYI FTTVFSWPTE KENYVDMSEV LINIAAPLDI  720
IHTVYEVDFK SMYRLITVKI LMPGHWVGRG TLIKVVTGNR CQWPALTKEW IGLGIMARSG  780
LLRVHQDSC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	214	219	RRRKTK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC144700	0.0	AC144700.2 Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0017H17, complete sequence.
GenBank	AP014967	0.0	AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015616319.1	0.0	uncharacterized protein LOC4350847
TrEMBL	A0A0E0MGW0	0.0	A0A0E0MGW0_ORYPU; Uncharacterized protein
STRING	OPUNC11G15520.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14897	2	2