PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC11G14540.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GATA | ||||||||
Protein Properties | Length: 248aa MW: 27815.9 Da PI: 6.0343 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 43.8 | 3.5e-14 | 185 | 220 | 1 | 34 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 C+nCg ++ Tp++R+gp+g+k+ CnaCGl+++ + OPUNC11G14540.1 185 CTNCGESSdaTPMMRHGPNGTKSFCNACGLMWANSR 220 ********************************9865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51320 | 11.731 | 91 | 126 | IPR010399 | Tify domain |
Pfam | PF06203 | 2.5E-7 | 153 | 184 | IPR010402 | CCT domain |
SuperFamily | SSF57716 | 9.98E-10 | 178 | 230 | No hit | No description |
SMART | SM00401 | 1.5E-8 | 179 | 232 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 6.7E-13 | 184 | 224 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 6.01E-11 | 184 | 234 | No hit | No description |
Pfam | PF00320 | 5.1E-12 | 185 | 219 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MDNPTPSSNA GGGAAAANAS SGEHHKTSPV TAAAHFFDEE HPFDDILLPM DLFDFTDGLD 60 DGHGCYVEDQ AAIGQKTLSP AAEQQLSPAA EHGDEERLVM YYHGQEYVFD SVQPQKIENI 120 FQHLNGQEMI PQSIRPQPTN LVRPITVPEN FDRFAALTRY REKKRNIKFI KKADYSARKE 180 VALSCTNCGE SSDATPMMRH GPNGTKSFCN ACGLMWANSR KIRKIKNPTS EQQEDQQFNK 240 YWIYNQSK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012619 | 1e-103 | CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015616301.1 | 1e-132 | GATA transcription factor 19 | ||||
TrEMBL | A0A0E0MGI3 | 0.0 | A0A0E0MGI3_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC11G14540.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15880 | 12 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51600.2 | 3e-28 | ZIM-LIKE 2 |