PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC11G13210.2
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 797aa    MW: 85995.2 Da    PI: 9.5914
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC11G13210.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.12.8e-17517613199
                      EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.s 88 
                      f+k lt  d+ k+ r+++pk++a+       +++   ++ l+++d++g++W +++  +++  + ++++GW eF+ an L +gD vvF+   r +
  OPUNC11G13210.2 517 FVKRLTYTDAAKN-RFIVPKDHAAVGvlpylQLD--DDVPLRIKDLNGKEWAFNY--TRRAHSRMFRSGWMEFATANSLVTGDNVVFM---RcD 602
                      6777766666666.6*******955599988555..5677***************..777777789**********************...446 PP

                      EE..EEEEE-S CS
               B3  89 efelvvkvfrk 99 
                      ++ ++v+v+rk
  OPUNC11G13210.2 603 NGDMFVGVRRK 613
                      77789***996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.0E-20514614IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.4E-19514613IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.112516614IPR003340B3 DNA binding domain
CDDcd100171.00E-15516612No hitNo description
PfamPF023625.0E-14517613IPR003340B3 DNA binding domain
SMARTSM010198.0E-12517614IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 797 aa     Download sequence    Send to blast
MVTGSMLLWK ANSTQSGGIA GEIHEASSIG GEPTHDRGQA PSLPLPSCRR REQRPRQSCF  60
QSATSVSEHG SNGRRKLPCR ARYPHLYISL TPSSPPFPHF KSRPPQFRIR HACRSQPPRP  120
WRRHLFRAGL QPRWRRRRGR AIRAAPLPHP CCPRFVDGLR GVERARYRRH LFSVVSSLGG  180
VDGEDAPCAS PPSPIPAGPA SSTVSAASSA PATGAYLGGI TGHRLGQEED SGGHENASVS  240
GIHVPSSRGI AFVSFGQRPQ EVLFTDLRLG LGSVSATDHM TNPSSAGQQQ RPQEVLFTDL  300
RVGLGSVSAT GHMTNSSSAG QHRVQAQQQQ SGRCPKQSRI CGSSSSSQLD HLPPPAGAGA  360
AVADMVVATT VPLQPPPPPT AAAAAGSSSP TMPEPGHGGA TPTTSSSAQA QAQAQVIVTR  420
DMWLACAAPK SGRLPAVGSL VYYFPDGHAE QCPSRPQEPL PGRIFLCKVT DVRFRATTTN  480
EALATISLVP VAANDHALQL QAPADPGPAP ARNLVSFVKR LTYTDAAKNR FIVPKDHAAV  540
GVLPYLQLDD DVPLRIKDLN GKEWAFNYTR RAHSRMFRSG WMEFATANSL VTGDNVVFMR  600
CDNGDMFVGV RRKLNRPAPV LVEEVIEAVW QAARCEPLKV SYCSRQDGDE FVVPRDIVDE  660
ALSARFTPGM AVNFVRAVEE GKLLTIGPQE EVISIENYAT SIWRMIQIGW TESSEMNKYA  720
NFWQVRSIGY DDLASAAPPP PSPKRLKSCE VATASTSSSA CNGDEQVQTM RNRLEALLPD  780
NIKAIIDQKG NPKGKDT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A2e-2641871419339Auxin response factor 1
4ldy_B2e-2641871419339Auxin response factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882780.11e-165B3 domain-containing protein Os07g0183700
SwissprotA3BH911e-165Y7838_ORYSJ; B3 domain-containing protein Os07g0183700
TrEMBLA0A0E0MG260.0A0A0E0MG26_ORYPU; Uncharacterized protein
STRINGOPUNC11G13210.10.0(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.34e-31auxin response factor 2