PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC11G13210.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 855aa    MW: 92212.1 Da    PI: 9.4948
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC11G13210.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3543.1e-17575671199
                      EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.s 88 
                      f+k lt  d+ k+ r+++pk++a+       +++   ++ l+++d++g++W +++  +++  + ++++GW eF+ an L +gD vvF+   r +
  OPUNC11G13210.1 575 FVKRLTYTDAAKN-RFIVPKDHAAVGvlpylQLD--DDVPLRIKDLNGKEWAFNY--TRRAHSRMFRSGWMEFATANSLVTGDNVVFM---RcD 660
                      6777766666666.6*******955599988555..5677***************..777777789**********************...446 PP

                      EE..EEEEE-S CS
               B3  89 efelvvkvfrk 99 
                      ++ ++v+v+rk
  OPUNC11G13210.1 661 NGDMFVGVRRK 671
                      77789***996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.79E-19572671IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.2E-20572672IPR015300DNA-binding pseudobarrel domain
CDDcd100171.13E-15574670No hitNo description
PROSITE profilePS5086313.112574672IPR003340B3 DNA binding domain
PfamPF023625.5E-14575671IPR003340B3 DNA binding domain
SMARTSM010198.0E-12575672IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 855 aa     Download sequence    Send to blast
MGMERAFLGS GSSSVLLGLP VLRSMRDLRT RQGVVLQLAQ LVDEAEVEVT TSARQHGGDD  60
GGREERKKAN STQSGGIAGE IHEASSIGGE PTHDRGQAPS LPLPSCRRRE QRPRQSCFQS  120
ATSVSEHGSN GRRKLPCRAR YPHLYISLTP SSPPFPHFKS RPPQFRIRHA CRSQPPRPWR  180
RHLFRAGLQP RWRRRRGRAI RAAPLPHPCC PRFVDGLRGV ERARYRRHLF SVVSSLGGVD  240
GEDAPCASPP SPIPAGPASS TVSAASSAPA TGAYLGGITG HRLGQEEDSG GHENASVSGI  300
HVPSSRGIAF VSFGQRPQEV LFTDLRLGLG SVSATDHMTN PSSAGQQQRP QEVLFTDLRV  360
GLGSVSATGH MTNSSSAGQH RVQAQQQQSG RCPKQSRICG SSSSSQLDHL PPPAGAGAAV  420
ADMVVATTVP LQPPPPPTAA AAAGSSSPTM PEPGHGGATP TTSSSAQAQA QAQVIVTRDM  480
WLACAAPKSG RLPAVGSLVY YFPDGHAEQC PSRPQEPLPG RIFLCKVTDV RFRATTTNEA  540
LATISLVPVA ANDHALQLQA PADPGPAPAR NLVSFVKRLT YTDAAKNRFI VPKDHAAVGV  600
LPYLQLDDDV PLRIKDLNGK EWAFNYTRRA HSRMFRSGWM EFATANSLVT GDNVVFMRCD  660
NGDMFVGVRR KLNRPAPVLV EEVIEAVWQA ARCEPLKVSY CSRQDGDEFV VPRDIVDEAL  720
SARFTPGMAV NFVRAVEEGK LLTIGPQEEV ISIENYATSI WRMIQIGWTE SSEMNKYANF  780
WQVRSIGYDD LASAAPPPPS PKRLKSCEVA TASTSSSACN GDEQVQTMRN RLEALLPDNI  840
KAIIDQKGNP KGKDT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A3e-2647677219339Auxin response factor 1
4ldy_B3e-2647677219339Auxin response factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882780.11e-165B3 domain-containing protein Os07g0183700
SwissprotA3BH911e-164Y7838_ORYSJ; B3 domain-containing protein Os07g0183700
TrEMBLA0A0E0MG250.0A0A0E0MG25_ORYPU; Uncharacterized protein
STRINGOPUNC11G13210.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2628755
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.44e-31auxin response factor 2