PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OPUNC11G11990.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | SBP | ||||||||
Protein Properties | Length: 215aa MW: 23249.8 Da PI: 8.1349 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 44.7 | 3.5e-14 | 2 | 32 | 48 | 78 |
SEEETTT--SS--S-STTTT-------S--- CS SBP 48 rfhelsefDeekrsCrrrLakhnerrrkkqa 78 +fh+l efD++k+sCr+rL++hn+rrrk+q+ OPUNC11G11990.1 2 KFHNLAEFDDGKKSCRKRLDGHNRRRRKPQH 32 8***************************987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51141 | 13.99 | 1 | 30 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 4.4E-8 | 2 | 29 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 3.34E-11 | 2 | 34 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 215 aa Download sequence Send to blast |
MKFHNLAEFD DGKKSCRKRL DGHNRRRRKP QHDALNPRSF LPYQQANQFS VYPQTFPIAD 60 QNTDALMHPL DRHPPFSISF SGTFRAPKQF PFLQDGSSGL STSRHDLLRP FSSPEDGANI 120 TTTRSACNGV PHGLDPECAL SLLSSSLHPS PAAGISSATA PAQFAPSSFS RIAASSQAVT 180 TAFASDGGSV AGDHVLVPAV TYEDPSQALP FSWQV |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 12 | 29 | KKSCRKRLDGHNRRRRKP |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC133608 | 0.0 | AC133608.4 Oryza sativa Japonica Group chromosome 11 clone OSJNBb0085G12, complete sequence. | |||
GenBank | AC135569 | 0.0 | AC135569.6 Oryza sativa Japonica Group chromosome 11 clone OSJNBb0018F17, complete sequence. | |||
GenBank | AP014967 | 0.0 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015617950.1 | 1e-139 | putative squamosa promoter-binding-like protein 19 | ||||
Swissprot | Q2R3Y1 | 1e-140 | SPL19_ORYSJ; Putative squamosa promoter-binding-like protein 19 | ||||
TrEMBL | A0A0E0MFM5 | 1e-155 | A0A0E0MFM5_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC11G11990.1 | 1e-156 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12961 | 25 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G50670.1 | 9e-13 | SBP family protein |