PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC11G09340.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 533aa    MW: 57487.4 Da    PI: 6.6806
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC11G09340.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.45.7e-11117173155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV+ ++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  OPUNC11G09340.1 117 SIYRGVTKHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 173
                      57*******************4444.2455535555.779999**************98 PP
2AP251.32.9e-16216267155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV+++++ grW A+I  +     +k  +lg+fgt eeAa+a++ a+ k++g
  OPUNC11G09340.1 216 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFGTQEEAAEAYDIAAIKFRG 267
                      57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.98E-18117183No hitNo description
SuperFamilySSF541711.31E-14117183IPR016177DNA-binding domain
PfamPF008472.5E-8117173IPR001471AP2/ERF domain
PROSITE profilePS5103217.122118181IPR001471AP2/ERF domain
SMARTSM003805.7E-23118187IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-11118182IPR001471AP2/ERF domain
PRINTSPR003672.4E-6119130IPR001471AP2/ERF domain
CDDcd000181.02E-23216277No hitNo description
SuperFamilySSF541719.15E-18216277IPR016177DNA-binding domain
PfamPF008473.6E-11216267IPR001471AP2/ERF domain
PROSITE profilePS5103218.834217275IPR001471AP2/ERF domain
SMARTSM003806.0E-33217281IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-17217276IPR001471AP2/ERF domain
PRINTSPR003672.4E-6257277IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MVAAAGGEEA PKLEDFLGMQ ETAAAAGHGR GGSSVGLSMI KNWLRSQPAP PAVVGGDAMM  60
ALAVSASASP AVDVTAAATS PDGMGMKTAD GGGESGGAAE AAQRMKAAMD TFGQRTSIYR  120
GVTKHRWTGR YEAHLWDNSC RREGQTRKGR QGGYDKEEKA ARAYDLAALK YWGTTTTTNF  180
PVSNYEKELD DMKHMNRQEF VASLRRKSSG FSRGASIYRG VTRHHQHGRW QARIGRVAGN  240
KDLYLGTFGT QEEAAEAYDI AAIKFRGLNA VTNFDMSRYD VKSIIESSNL PIGTGTTRRL  300
KDSSDNHTVN AVMDINVNTD ANNAVASQFS NGVGHHDSQH YVYNGWSPIS MQPIPLQYAN  360
GQSRAWLKQE QDSSAVAAQN LHNLHHFTSL GYTHNFFQQS DVPDVTGFVD VPSRSGDSYS  420
FRYNGTNGFH GLPGGISYAT PVATAVDQGQ GIHGYGEDGV AGIDTTHDLC GSRNVYYLPE  480
GSLVADVEKY GHYGQSVGGN SWVLPTPESE MVEKADNVTV CHGMPLFSVW NDA
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2876210.0AK287621.1 Oryza sativa Japonica Group cDNA, clone: J065066I09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025876947.10.0AP2-like ethylene-responsive transcription factor BBM1
SwissprotQ8LSN21e-127BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLA0A0E0MES70.0A0A0E0MES7_ORYPU; Uncharacterized protein
STRINGOPUNC11G09340.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP156937110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20840.11e-115AP2 family protein