PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC11G08800.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family FAR1
Protein Properties Length: 676aa    MW: 77267.9 Da    PI: 8.4803
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC11G08800.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR162.81e-19139227290
             FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtr.aetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                       +n+YAk++GFs+++++s+ks ++ge  k  fvC+k g +e++ ++   ++r+r  + +   ka+++vk++  ++wev+++++eH+H+l+
  OPUNC11G08800.1 139 HFNRYAKRIGFSIKINTSRKSAKDGERDKVMFVCNKCGPEEKTGEACPPKKRKRsRTRQAAYKARMTVKRK-GARWEVIQFVEEHTHPLV 227
                      59****************************************99995555555405555678********9.****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.4E-17139227IPR004330FAR1 DNA binding domain
PROSITE profilePS509668.283492528IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 676 aa     Download sequence    Send to blast
MDFDPNSIPE LVSGENEPPV HHLLFDDEDR SETYFPINPT DTSMEIPAIN LDDTFDFETM  60
YTAANDEMQV FEEMSDHADT MHTGVATGAT TATANTISSE DSGTDDSEAQ SAPSQDFPCN  120
TQVPYLTLTF NSEEEARAHF NRYAKRIGFS IKINTSRKSA KDGERDKVMF VCNKCGPEEK  180
TGEACPPKKR KRSRTRQAAY KARMTVKRKG ARWEVIQFVE EHTHPLVRKF SLKKFLRSHR  240
AIPKKEKDFI TLLHGVNLSA GRIMQLMSEL YGGARNVPYT RKDISNFKSK LGSEYRCRDI  300
PQTISHFEEI KKDDPNFFYK IQLDKEDRVQ NIFWVDEATR NAYKDFKDFI SFDYTYMTNM  360
YNIPCAPFIG INRHGQSIQT TPRSEGFNTV LKRYVYPQNS IYNFFLQYKK IQEKITVAID  420
QNEFEAEETI PSMWGNYPME TKALKVYTTP IFNRFQKELI ASTSYKLTRT SENMYLVELN  480
GGLVRNYGSK AFIVAANVLD RIYICECCKF ERDDILCCHV LKVMTSDSVG QVSDIPEHYI  540
LPRWMMVKEP ELPPVTSIGE QMQLLPESLK LIRLQKDASS NEKAYRMALQ CMSSMTDDLA  600
AMKQSRKKQK KAQPAPVDPA RGISDIPSAS TNPTVQINDP PIIQKQGRLG STRRKPGFHA  660
KASKTSVRKG LASTKK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1187192KKRKRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0046510.0AP004651.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0091G06.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0MEK30.0A0A0E0MEK3_ORYPU; Uncharacterized protein
STRINGOPUNC11G08800.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP559546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-39FAR1-related sequence 5