PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC11G08590.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | Nin-like | ||||||||
Protein Properties | Length: 947aa MW: 104599 Da PI: 6.0304 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 94 | 1.1e-29 | 585 | 635 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++ OPUNC11G08590.1 585 EKSISLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKIKKV 635 799**********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.427 | 574 | 655 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 4.4E-26 | 588 | 635 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 1.57E-23 | 836 | 928 | No hit | No description |
Gene3D | G3DSA:3.10.20.240 | 2.3E-24 | 840 | 922 | No hit | No description |
SMART | SM00666 | 1.7E-25 | 843 | 925 | IPR000270 | PB1 domain |
PROSITE profile | PS51745 | 26.302 | 843 | 925 | IPR000270 | PB1 domain |
Pfam | PF00564 | 3.7E-19 | 844 | 924 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 947 aa Download sequence Send to blast |
MDGGGGTPDG DPVSDMDMLM LSSAFDGLES YTDLVAGPSV ADSIFSALTC FPPPPPQQLL 60 HISTPVGSNS KQDGADVSIT EDDGTRSDRA AGLALGEVVA AGMGSVPKPF DVVTLTERML 120 RALAMLKEAS GGEVILVQVW MPVRNGEQQV LTTSDQPFLL DQNLTGYREV SRQFTFSAEE 180 GPGLFPGLPG RVFMSGMPEW TSNVMYYHGS EYLRVDYARH HEVRGSLAMP VFNSSGGSCC 240 AVLEVVMTRE KDNFCLEMVN VSNALQGNLD QFAYLDQLEV LRLQSPCHLQ LISPTFGLAN 300 QHRMRVVPSR TRVDTQARKS YSRNQKLALM EIFDVLQAVC QAHLLPLALA WIPVCSKRDV 360 HVSVEYGAKF GKRNKEVLCI EESACYVNDM RMRDFVQVCA EHPLEKGQGV AGNAYLSNNP 420 FFSSDVKDYD MHAYPLVNHA RKFGLRAAVA IRLRSTYTKN DDYVLEFFLP VLCKGGEEQQ 480 LLLDSISATM RKVCKSLRTV SDAELKEDAT RQPSNENRSG TRCPSPVNLI YSGQEIDVSN 540 ETKTNTPLEY QIESIDEQLA DAKSTNKLIK CSNASDGEKR RSSTEKSISL SVLQQYFSGS 600 LKDAAKSIGV CPTTLKRICR QHGISRWPSR KIKKVNRSLK KIQNVISSVH GVEGVLKYDP 660 STGCLVSSVS PSIEPVLMNV DHRGSDPLPI ESELPHLNFE PNRDAYRREH VGQDVHELQN 720 EQNGAIDFDV DDGGLFRNSH STRTLSGRFC EDIPNGLYVA REMTCAAKTG TRTERLEHKP 780 SSRDSFSTPQ ECRMESETDK SNKNAKQSLP SSSSMTDCSS GGTSSGETFK SIKSKSANES 840 NTTIVVKASY KNDTVRFKLL PSMKYEQLLE EIAKRLKLSV GVFQLKYKDD EGDWVILASD 900 ADLQECLEIL DTTRLHILKL QVQDVVCPTG SSSERCGFGS TVIDLFL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK064859 | 0.0 | AK064859.1 Oryza sativa Japonica Group cDNA clone:J013000H14, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015616880.1 | 0.0 | protein NLP2-like isoform X1 | ||||
Refseq | XP_015616881.1 | 0.0 | protein NLP2-like isoform X1 | ||||
TrEMBL | A0A0E0MEH2 | 0.0 | A0A0E0MEH2_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC11G08590.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3670 | 35 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59580.2 | 1e-170 | Nin-like family protein |