PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC11G07820.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ZF-HD | ||||||||
Protein Properties | Length: 409aa MW: 43301 Da PI: 7.7733 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 102.9 | 2.2e-32 | 146 | 200 | 3 | 58 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 v+Y+eClkNhAa++Gg+a+DGCgEfmps geeg+ +alkC+ACgCHRnFHR++v+ OPUNC11G07820.1 146 VVKYRECLKNHAAAIGGNATDGCGEFMPS-GEEGSLEALKCSACGCHRNFHRKDVD 200 589*************************9.999********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 3.5E-29 | 147 | 199 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 2.6E-30 | 148 | 198 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 3.0E-24 | 148 | 200 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.752 | 149 | 198 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 7.07E-22 | 296 | 370 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.9E-32 | 298 | 371 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.3E-27 | 309 | 365 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 409 aa Download sequence Send to blast |
MVSILQLQTR TEAASSASAT RRIFAVVRRQ QQEEEEEEEE FEFQERMDLS GTQGELPIPM 60 HAAAVASPYA GMGAHGGGAG GHVMELHRHE HVGNNGQAAQ AMAMASPPTT TMAVAEQERE 120 ESSPVASKKR GSMSMVVVGG GGGGVVVKYR ECLKNHAAAI GGNATDGCGE FMPSGEEGSL 180 EALKCSACGC HRNFHRKDVD DFDGDSCAAL RGGRHLLGPA VPHHHKKGGG GGGGGGLLVA 240 GDPYGAAYAA ARALPPPPPH GQGHHHHHHQ IIMPLNMIHT SESDEMDGSG GGAMGGTGRG 300 GGGSSSSSKK RFRTKFTAEQ KARMLEFAER VGWRLQKLDD AMVQHFCQEI GVKRRVLKVW 360 MHNNKHNLAK KPLPSSPPPP QIPMAMPPSP PPMPMPPSHP PSPPQLKLE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 3e-24 | 308 | 367 | 16 | 75 | ZF-HD homeobox family protein |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012619 | 1e-177 | CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020179853.1 | 1e-135 | zinc-finger homeodomain protein 4-like isoform X1 | ||||
Swissprot | Q53N87 | 1e-132 | ZHD4_ORYSJ; Zinc-finger homeodomain protein 4 | ||||
TrEMBL | A0A0E0ME83 | 0.0 | A0A0E0ME83_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC11G07820.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP815 | 35 | 145 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14440.2 | 2e-27 | homeobox protein 31 |