PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC11G06210.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB | ||||||||
Protein Properties | Length: 271aa MW: 29396.7 Da PI: 10.6694 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.5 | 2.7e-17 | 26 | 71 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ede+l ++v+++G+ +W++Ia+++ gR++k+c++rw++ OPUNC11G06210.1 26 RGHWRPGEDEKLRQLVEKYGPQNWNSIAEKLE-GRSGKSCRLRWFNQ 71 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 62.4 | 8.9e-20 | 79 | 122 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+eE+e+l+ a++ +G++ W++Iar+++ gRt++ +k++w+ + OPUNC11G06210.1 79 RPFTEEEEERLLAAHRHHGNK-WALIARHFP-GRTDNAVKNHWHVV 122 69*******************.*********.***********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.662 | 21 | 72 | IPR017930 | Myb domain |
SMART | SM00717 | 2.1E-14 | 25 | 74 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.74E-30 | 25 | 119 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 8.2E-17 | 26 | 71 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.3E-27 | 27 | 79 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.57E-14 | 29 | 70 | No hit | No description |
PROSITE profile | PS51294 | 28.918 | 73 | 127 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-16 | 77 | 125 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.9E-17 | 78 | 121 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.3E-22 | 80 | 122 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.63E-9 | 89 | 120 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
MASSSTTNTS DGAGKPASSS SSACPRGHWR PGEDEKLRQL VEKYGPQNWN SIAEKLEGRS 60 GKSCRLRWFN QLDPRINKRP FTEEEEERLL AAHRHHGNKW ALIARHFPGR TDNAVKNHWH 120 VVRARRSRER SRLLARAAVP HPHVATTQQL DFGAGASSVA RNGSLCFGFG GAGGVSPLFF 180 NKPFATGASF ETSSRYGGKV MKLPATTMAA AVSNIGFSST PMRSETLELM DGAGHDNGGG 240 GGHHHRHHHG DVDGGDKRQG VPFFDFLGVG V |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 6e-30 | 26 | 126 | 4 | 104 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 4e-30 | 26 | 126 | 4 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 4e-30 | 26 | 126 | 4 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JF951910 | 1e-119 | JF951910.1 Triticum aestivum clone TaMYB27 R2R3-MYB protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015615875.1 | 1e-109 | transcription factor CSA-like | ||||
TrEMBL | A0A0E0MDP3 | 0.0 | A0A0E0MDP3_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC11G06210.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP294 | 38 | 260 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17950.1 | 1e-49 | myb domain protein 52 |